Oncorhynchus mykiss (rainbow trout): 110531422 Help Entry 110531422         CDS       T07259                                  Name (RefSeq) collagen alpha-5(IV) chain   KO K06237   collagen type IV alpha Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy04382   Cornified envelope formation omy04510   Focal adhesion omy04512   ECM-receptor interaction omy04518   Integrin signaling omy04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:omy00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     110531422    04518 Integrin signaling     110531422  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     110531422   09142 Cell motility    04820 Cytoskeleton in muscle cells     110531422  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     110531422  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:omy04147]     110531422    00536 Glycosaminoglycan binding proteins [BR:omy00536]     110531422 Exosome [BR:omy04147]  Exosomal proteins   Exosomal proteins of other cancer cells    110531422 Glycosaminoglycan binding proteins [BR:omy00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110531422 SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  110531422 NCBI-ProteinID:  XP_036843196 LinkDB All DBs Position 9:complement(10791193..10885360) Genome browser AA seq 1682 aa AA seqDB search MKKNVKSLRNLAMELMVVTLCITVQESESAACHGCAAGSRCDCSGVKGVKGERGLPGLQG QLGVPGFPGPEGPIGGRGEKGSDGPSGTGGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG PKGTAGCNGTKGERGFPGSPGFPGLEGRLGPPGFPGQKGDPGDIITNERFGQIGGVGLPG RPGVPGDQGPSGLSGPTGPPGPRGYEGRPGPPGLPGPKGNMGLNFQGPKGDKGNSGLQGP PGPPGQVGEQTRPSVSSIQKGETGDQGLPGPPGDPGYPGPPGSSGGLKGEKGENGEAGKR GKPGKDGDPGPAGFPGSKGDPGGPGLPGRDGDRGAKGDRGYPGRPGVQVSNGPATVGPKG EPGRPGETGRKGDRGQPGLSGPPGQPGTPGIGGGGQPGLPGYPGERGQKGDEGQPGISIP GNPGRGGAPGLQGRPGPPGPPGISNGGFNCTGGAPGLPGQQGNIGFQGEIGQKGEKGDTC VNCFSRGNSVPGARGPPGPPGFPGAPGGPGAKGDRGFPGGPGPSGSSGLPGPQGAPGFPG EKGDPGETTAVNGVSGDKGDTGFPGPAGLPGLDGRPGRDGGPGAPGAKGSSGSLLVKGER GPPGEPGLQGLPGDRGATGSPGFGPQGPPGEKGVQGVSGRTGTPGAPGGKGEPGQTVAEK GLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGSPGPKGDPGLSGIGLPGPPGAKGFPGSPG LPGGPGGPGRPGVDGFPGQPGAPGVKGEPGFGLSGPQGSPGFPGDKGLPGPKGDSGFPGN PGLPGRSGFDGGPGAKGDSGIPGRTGDRGPQGSPSIGSQGVPGPVGPPGPIGAPGYSGNN GEKGDPGLPGPGITGLPGDRGSPGFPGSPGGVGPQGNPGGPGRDGIPGLPGGKGDMGVMG TPGSLGSPGNPGGPGFPGPKGDDGFPGRPGGTGSPGLKGDRGDPGLVGLPGPSNSPTSVK GAKGDAGEPGLRGQPGQKGISGLPGDAGIPGQDGRPGLPGPQGPKGDMGIPGGSGSPGSQ GLKGNMGEMGFPGPTGAKGTPGQLGRSGVPGSSGAPGFPGAKGDPGSPGFGATGATGPKG EPGRSGFPGQNGVKGTPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGTPGNPG LAGGPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDQGLSGFGGPGSPGLPGSPGA KGDFGAPGLPGNPGFPGQKGEMGFPGQPGSPGSIGPPGAPGVALQGPKGNSGSPGPPGRG GPPGPEGPRGLGGSGGTKGEKGVPGSSGSPGFPGAKGELGSPGFPGIPGPPGGSGLKGDI GLPGVPGFPGLKGESGSPGSSGLPGDPGDPGPAGIQGDPGVAATPIMLKGERGPPGPSGL PGNRGSQGPPGQEGRSGQPGQPGDPGPEGPPGFSGAFGRKGDSGPAGQPGQRGYPGPTGS DGQQGPPGNPGSASVTHGFLISRHSQAEYVPNCPEGTSLIYDGFSLLYVQGNERAHGQDL GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPMPMPMSMAPITGEGIKPFISR CAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGFSFMMHTSAGAEGSGQALASPGSCLEE FRSSPFIECHGRGTCNYYGNTYSFWLATVDQSEMFRKPQSETLKAGNLSTRISRCVVCMK RT NT seq 5049 nt NT seq  +upstreamnt  +downstreamnt atgaaaaaaaacgtaaagagtctgcgaaatctcgccatggagttgatggttgttaccctg tgtatcacggtccaggagtcggaatcagcggcgtgtcatggatgtgcagcgggatcaagg tgtgactgcagcggagtgaaaggagtcaagggtgaaagggggttaccaggactacagggt cagctgggtgtaccggggttccccggacctgaggggcccatcggtggcaggggagagaag ggtagtgacggaccttcagggactggaggtccaaaagggataagaggacctcccggactg cctggattccccggaacaccaggaattccaggtctcccgggacaggatggccccccaggc cccaaaggaactgcaggctgcaacgggactaagggtgagcgaggattccctggaagtcca ggcttccccggactggagggtcgattgggtccacctggttttccaggacaaaagggagac ccaggtgacatcatcacaaatgaacgtttcggacagataggaggtgtaggtctgcctggc cggcctggagttcctggtgaccaaggcccctcaggattgtccggtcctaccggccctccc ggccccagaggttatgagggtcgtcccgggcctcctggtcttcctggtccaaagggaaac atggggttgaacttccaaggtcccaaaggagacaagggtaattcaggtctgcagggacct cccggaccaccaggacaagttggggagcaaacaagaccctcagtgtcgagcattcagaaa ggagaaacgggtgatcaaggtttacctggtccacctggtgatcctggttatcctggaccc cctggttcatctggtggtttgaagggagagaaaggagaaaacggagaagcaggcaaaagg ggcaaaccggggaaagatggagacccaggtcctgctggattccctggtagtaagggagac ccaggtgggccaggtctgccgggtcgggatggtgacaggggtgccaaaggtgaccgtgga tatcctggacgcccaggcgtgcaggtgagcaatggtccagctacagttgggcctaaagga gaacctgggcgtcctggggagacgggaaggaaaggagacagaggacagcctggtctctcg ggtcctccaggtcaaccaggaaccccaggtatcggaggtggaggccagcccggtttacca ggctacccaggagagaggggccagaagggagacgagggccagccaggcatctccatcccc gggaacccaggacgaggtggcgcccctggtctgcagggacgtccaggacctcctgggccc ccagggatctccaatgggggttttaactgtacaggaggggcccccgggttaccaggacaa caaggcaatataggattccaaggagagatcggacagaaaggtgagaagggagacacctgc gttaactgtttctccagaggcaacagtgtccctggagcacgaggcccacccggacctcct gggttcccaggggcacctggaggaccaggggctaaaggtgacagaggattcccaggcggc ccagggccctcaggttcttctggtttgcccggtccccagggtgcccctggtttcccagga gagaagggtgacccaggtgagactaccgctgtgaatggggtgagcggagataagggagac acagggtttccaggacccgctggcctgcctggtctggacggaagacctggtcgcgatgga ggtcctggagctcctggagccaaaggatcatctggatctctattagtgaagggtgagcga ggacctccaggtgagcccggtttgcagggtctcccaggtgacaggggtgccaccggatcc ccaggcttcggcccccaggggccccccggagagaagggtgtccaaggtgtctcagggaga acgggaacacctggagcaccaggaggtaaaggggagccgggtcagacggtagcagagaag ggcctcccaggacccagaggacaggatggagaccccggtctacctggaaacccaggtaac cccggcgggccaggacagcccggtttccccgggtcaccaggtcccaagggtgatcccggc ctctctggcatcggactgccaggaccccccggagctaaaggattccctggctcacctggt ttgccaggtggtcccggaggtccaggtagaccaggtgtggacgggttccccggacagcca ggtgcacctggagttaagggagagccaggctttgggctgtcaggtccccagggctcacca ggcttccccggagataaaggattacctggacccaaaggagactctggtttccctggcaac cccggcttgccaggacgatccggctttgacggcggccctggtgccaaaggtgactctggt atccctggtagaaccggagatcgtggccctcaaggatcaccctccatcggctctcagggt gtccccggccctgtcggacccccaggacctattggtgctccaggatactcaggcaacaat ggagagaagggagaccccggtcttcctggcccgggcattacagggttgccaggagacaga ggaagtcccggtttccccggcagccccgggggagttggtcctcagggtaaccccggtggc cctggccgcgatggaatacctggcctgcctggtggtaaaggagacatgggtgtaatggga actcctggatctctgggatcccctggcaaccccggagggcccggcttccctggacctaaa ggtgacgatggtttcccagggcgaccaggtgggaccggcagtccaggtctcaagggagac aggggagaccccggtctcgtaggactccccgggcccagcaactctcccacttcagtcaag ggagccaaaggagatgcaggagaaccaggtttgcgaggtcagccgggtcagaagggtatt tccggtctccctggagacgctggtataccaggacaggatggaagacctgggttacctgga cctcaaggtcccaaaggagacatgggtatccctggaggatcaggctcaccaggaagccaa ggacttaaaggcaacatgggagagatgggcttcccaggacccacaggagcgaaaggaact ccaggtcagctaggtcggtcgggcgtacccggtagttcaggagcaccagggttccccgga gctaaaggagacccaggttcccccggatttggtgccacaggagctacaggtcccaagggt gagcccggtcggtcgggattccccggacaaaatggagtgaaaggaactcccggaacacca gggcttccagggtttcccggcggccccggagccaaaggcgaccccggcctcccaggattc caaggttctcccggtattcccgggcctaagggtctagacggtacccctggtaaccccggt ctcgccggaggccccgggcgaccgggagagaatggccgtgccggatcacctgggttccca ggcgacaagggtcaggcaggtcgtgacggaatccctggaccagcgggggtcaaaggagac caaggtctttctggtttcggcggcccaggttctcctggtctcccagggtcaccaggtgct aagggagattttggcgcccctggtctcccaggtaaccctgggttccctggtcagaaggga gagatgggcttccccggccaacctgggtcccccgggagcatcgggccccctggtgcccca ggtgtggccctccaggggcccaagggtaacagtggatcccccggcccccctggaagagga ggtcctcctggccccgagggtcctcgtggccttgggggcagcggagggaccaaaggtgag aagggagtccctggatcttccggatcccctggtttcccgggagcgaagggagaattggga tcgcccggattcccaggtattcctggccctcctggtggcagcgggctgaagggagacatt ggacttcccggcgttcccggattcccaggactaaagggagaatctggaagccctggatca tccggtctgcctggagatcctggagatcctggtcctgctggaatccaaggcgacccaggt gtcgctgcgacccccatcatgctgaagggagaacgtggcccccctggcccttcaggtctg ccaggcaaccgtggctcccaaggaccccccggacaggagggacgctcaggtcagcccggt caaccaggggaccccggtcctgaaggacccccaggattcagtggagccttcggccgcaag ggagactctggacccgccggacagccaggtcagcgtgggtacccaggtcccactggttca gatggtcaacagggccccccaggtaaccccggctcagcctctgtgacccatggcttcctg atctcgagacacagccaggctgaatatgtccctaactgccccgaagggaccagcctcatc tacgacgggttctctctgctctacgtacagggcaacgagagggcacacggacaggaccta ggtactgctggtagttgcctgcgtcggttcagcaccatgccattcatgttctgtaacatc aacaacgtgtgtaacttcgcctcccgtaacgactactcctattggctgtctacacccatg cccatgcccatgagtatggcccccatcaccggagaaggcatcaaacctttcatcagcagg tgtgcagtgtgcgaggcccctgccatggtgatcgctgtacacagtcaaaccattcagatc cccacctgccccagctactgggaaccactatggatcggattctccttcatgatgcacacc agtgcaggtgctgagggctctggtcaggctctggcctctcctggctcctgtctcgaggag ttccggagctctcccttcatcgagtgtcacggccgagggacctgcaactactatggcaac acatacagcttctggctggccactgtcgaccaatcagaaatgttcaggaagccacagtca gagacgctgaaggcaggtaacctatcgacgcgcattagccgctgtgtggtctgtatgaag aggacgtaa

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