Oncorhynchus mykiss (rainbow trout): 110531704
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Entry
110531704 CDS
T07259
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 3 isoform X1
KO
K11642
chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110531704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110531704
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110531704
Chromatin remodeling factors
NuRD complex
110531704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
HDA2-3
PHD-1st_NSD
ResIII
HTH_Hrp3
PHDvar_NSD
AAA_22
HMG_box
DEAD
PHD_2
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
110531704
NCBI-ProteinID:
XP_021470708
Ensembl:
ENSOMYG00000005962
LinkDB
All DBs
Position
9:complement(20022194..20075490)
Genome browser
AA seq
2134 aa
AA seq
DB search
MNIMSSPLRSCEEDQGMLVNSEGVDFDEEDEDDGDLDENASDINSPAAPRETATLAAPVE
EEREASDRASLGRKKRGPKKKETKKKEKEKEGKPVKAKKRKKIESDVERDSERERDYGEN
SDSAASDFSGEKKKKKKHKEKKEKKTKKKKKDDEDSTHEETTKPIEQKTSAQLAMDWGLE
DVDHTFTEDDYRTLTNYKAFSQSMRPMIAKKNPKIPMSKMMTILGVKWREFSSNNPFKGS
GAAAVAAAAAAAAIAVAEQVSAATPSPEPPPPRKQPQPPRPPPLPPPPPPPLRKAKTKEG
KGPGYKKSRSKSPRVLAERKKAVAAAVAASVAKAKKMSPIRIKLGALGNKRKKSSSSGDD
VDEEDSLQEDSSVHSSSVRSDSSSRVKKNKRGRPAKKNKKMLDEGEVEGDGYETDHQDYC
EVCQQGGEIILCDTCPRAYHLVCLEPELEKAPEGKWSCPHCEKEGIQWEAKDEDFEEFEE
ESEDMVVPEVPGVGLLVGLEEEEDDHIEFCRVCKDGGELLCCDTCTSSYHIHCLNPPLPE
IPNGEWLCPRCTCPAIKGRVQRILHWRWGEPPDPVPVPPAPDTPPDAPPPPPMKGRAERE
FFVKLTGQSYWHCTWITELQLEIFHSVMFRNYQRKTDMEEPPSLDYGSGGEEESIKSEKR
RLKDPDYAALDDKFYKYGIKPEWMMVHRIINHSMDKKGIYHYLVKWRDLTYDQCTWERDD
LEMPEFVIHKANYWAHRDEVMKEAPDMPRRMRRMRMEESEDPHRSPVNDPTIKYEEQPDF
VTATGGTLHLYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLFKEGHTRGPF
LVSAPLSTIINWEREFEMWAPDFYVVTYTGDKDSRAIIRENELTFDDTAVRGGRKTFKLR
REAPIKFHVLLTSYELVTIDQTSLKSIDWACLVVDEAHRLKNNQSKFFRRLNDYTIDHKL
LLTGTPLQNNLEELFHLLNFLTPNRFNNLEGFLEEFADISKEDQIQKLHDLLGPHMLRRL
KADVFKNMPSKTELIVRVELSPMQKKYYKLILTRNFEALNSKGGGNQVSLLNIMMDLKKC
ANHPYLFPVASMEARKTASGAYEGMDLTKASGKLTLLQKMMRKLKDQGHRVLVFSQMTKM
LDLLEDFLDFEGYKYERIDGGVTGALRQEAIDRFNAPGAPQFCFLLSTRAGGLGINLATA
DTVVIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV
VRPGLGSKAGSMSKQELDDILKFGTEELFKDEIESGDNRDDEGSVIHYDSSAIERLLDRS
QDATDDTDMQNMNEYLSSFKVARYMVREEDKIEEVEREIIKQEECVDPEYWEKLLRHHYE
QQQEDLASKLGKGKRNRKPVNYNDAAQEDQEWHAGISDNQSEYSVGSEEEDEDFDERPEG
SRRQSRRQMRNERDKPLPPLLARVGGNLEVLGFNTRQRKAFLNAVMRWGMPAQDAFSCQW
LVRDLRGKSEKEFKAYVSLFMRHLCEPVADGAETFADGVPREGLCRQPVLTRIGVMSLVK
KKIQEFEHINGRWSLPELKPEMKPEALRPEVSVSSSSRASSPGGTMKTATPTPDPSCTSD
NTPCTSKPATPAPSDKLEKNGKDGEKEEEDEEGKASSEPEQDGEKEKNEGKEEESNKSAD
PEETPISTKEALQELSPCTTTDKEEKGTKEEKEGKETKTTDTLPALVEEKKVEEESKEEG
SFGETTKQGSEVKHEKPGSVTLSPREKVEEEKEKDNNKEKDMEKSEEAPVPTEGPDNMER
MERQQPSDVMKEEVKGEKDAGKEVAKEEVAKDALPKPPITPPERRRFMFNIADGGFTELH
TLWQNEERAAISSGKMNEIWHRRHDFWLLAGIVLHGYARWQDIQNDPQFAIVNEPFKSQA
NKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPVHPAMALNARYAEVECLA
ESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRVPPIAARLQMSE
RSILSRLASKGTDTHPPPTIPPGPYATPQNFGPPFTPTPLGVLPMGGANYSQMPPGSFVS
VLNGPPVSVKKEREAEQLLSRRDQRRGEVICIDD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atgaatataatgtcctctcctctccggtcctgtgaggaagaccagggcatgttggttaat
tccgagggagtagattttgatgaagaagacgaggacgacggagatctagacgagaacgca
agcgacataaactcgccggcggcgcctcgagaaactgcaacactagccgcgccagtagag
gaagaaagggaagcatcagacagggccagtctagggaggaagaaacgagggcccaagaag
aaggagacaaagaagaaggagaaagagaaagagggaaaaccggttaaagccaaaaaacgg
aaaaagattgaaagtgatgtagagagagactcggagcgagagagagattatggtgagaac
tccgacagcgcagcgagtgacttctctggcgagaaaaagaagaagaagaaacacaaggaa
aagaaggagaagaaaaccaagaagaagaaaaaagatgatgaggacagcacgcacgaggag
acaacaaagccaatagaacagaagacgtcggcccagctggctatggactggggtctggag
gatgtggatcatacattcactgaagacgattaccgcacactcaccaactacaaagccttc
agccagtccatgaggcccatgatcgccaagaagaaccctaagatccccatgtctaagatg
atgaccatcctgggggtcaagtggagggagttcagctctaacaaccccttcaagggctcc
ggtgctgcagccgtggcagctgcagccgccgccgccgccattgccgtcgccgagcaggtc
tccgcggcaaccccatccccggagccacctccaccccggaagcagccccaacccccacgg
ccgccccccctgccaccacccccgcctcccccgctccgcaaggccaagaccaaagagggc
aaaggccctgggtataagaagagtcgcagtaagagtcctcgtgttctggctgagaggaag
aaggcggtggcagcagcagtagcggcttcagtagctaaagccaagaagatgtcccccata
cgcataaaactgggggccttaggcaacaagagaaagaagagcagctctagtggtgatgat
gttgatgaggaggactcgctgcaagaggactccagtgtccacagctcctcggtccgctcc
gacagctcctcccgggtcaagaagaacaagagaggacgcccggccaagaagaataagaaa
atgctggatgagggtgaggtggagggggatggttatgagacagaccaccaggactactgt
gaggtgtgccagcagggaggggagatcattctgtgtgacacctgtcctagggcctaccac
ctggtctgtctggagcctgagctggagaaggcccccgagggcaagtggagttgcccacac
tgtgagaaagaggggatccagtgggaagcgaaggatgaggactttgaggagtttgaggag
gagagtgaggacatggtggtaccagaggtacctggggttggactgctggtaggactggag
gaagaggaggatgaccacattgagttctgcagggtctgtaaagatgggggggaactattg
tgctgtgacacctgcacttcctcctaccacatccactgtctcaacccgcccctgcctgag
atccccaacggagagtggctgtgtccacgctgcacttgtcctgctatcaagggcagggtg
cagaggatcctccactggcgatggggcgagccccccgatcctgtacccgtgcctcccgcc
cccgatacccctcctgatgctcctccgccaccccccatgaagggcagggctgagagggag
ttctttgtcaagctgactggacagtcctactggcactgtacctggatcactgaactgcag
ctggagatcttccactctgtgatgttccgtaactaccagaggaagacagatatggaggag
cctcccagtctggactatgggtcggggggagaggaggagagtattaagagtgagaagagg
aggctgaaagacccagactatgctgccctggatgacaagttctataaatacggcatcaag
cctgaatggatgatggtccaccgcatcatcaaccacagtatggacaagaaagggatatac
cactacctggtcaagtggagagacctgacctacgaccagtgcacatgggagagagacgat
ctggagatgccagagtttgtcattcacaaggccaactactgggcacacagggatgaggtg
atgaaggaggccccagacatgccgaggaggatgaggaggatgaggatggaagagagtgaa
gacccccacagatcacctgtcaacgaccctacgataaagtacgaggagcagccagacttt
gtgacggcgacggggggcactctgcacctctaccagctggagggactcaactggctgcgt
ttctcctgggcacagggcactgacaccatcctggcagacgagatggggctgggcaagact
atccagaccatcgtcttcctttactcactctttaaagagggccacactaggggcccgttc
ctggtgagtgcccccctctccaccatcattaactgggagagagagtttgagatgtgggcc
cctgacttctacgtggtgacctacacaggagacaaggacagcagagccatcatcagagag
aacgagctgaccttcgacgacacggccgtacggggagggaggaaaaccttcaaactgagg
agagaagcccctataaagttccatgtcctgttgacgtcctatgagctggtgacgatagac
cagacctccctgaagtctatagactgggcctgtctagtggtggacgaagcccaccgcctc
aagaacaaccagagcaagttcttcagacgtctgaatgactatacgattgaccacaagctg
ctgctgactggtactcctctacagaacaacctggaggagctgtttcacctgctcaacttc
ctcactcccaaccgtttcaataatctggaggggttcctggaggagtttgcagacatctcc
aaggaggaccagatccagaagctccatgacctgctgggtccccacatgttgaggaggctg
aaggctgacgtcttcaagaacatgccgtccaagactgagctcatcgtacgagtggaacta
agccccatgcagaagaaatactacaagttgattctgacaaggaactttgaggctttgaac
tctaaaggaggaggtaaccaggtgtctctactcaacatcatgatggacctgaagaagtgt
gccaaccacccctatctcttccctgtcgcctccatggaagcccgcaagacggcgagcgga
gcgtacgagggcatggacctcacaaaggcttctgggaaactgactctgttgcagaagatg
atgaggaaactgaaggaccagggacaccgggtgctagtcttctcacagatgactaagatg
ttggacctgttggaggacttcctggactttgagggttataagtacgagaggatcgacgga
ggagtcacaggagctctgagacaggaggccatagacaggttcaatgctcctggtgctcct
caattctgtttcctgctgtccaccagggcagggggtctgggtattaacctggccacagca
gacactgttgtcatcttcgactcagactggaacccccacaatgacatccaggcattcagt
cgcgcccaccgcatcgggcaggccaacaaggtgatgatctaccgttttgtgacccgtgcc
agtgtggaggagcgcatcacccaggtggcaaagaggaagatgatgctgacccacctggtg
gtgaggcccggcctgggctccaaggctggatccatgtccaaacaggagctggacgacatc
ctcaagttcggcaccgaggaactcttcaaggacgagatcgaatcgggggacaacagggat
gatgagggcagtgtgatccactatgacagctcggccatcgagagactgctggaccggagc
caggacgctacagacgacacagacatgcagaacatgaacgaatacctcagctccttcaaa
gtggcccgctacatggtacgagaggaggataagattgaggaggtggagcgtgagatcatt
aagcaggaagagtgtgtggacccagaatactgggagaagctgctgagacatcactatgag
caacaacaggaggacctggctagtaaactgggcaagggcaagaggaaccgcaagcctgtc
aactacaacgacgcagcacaggaggaccaagagtggcatgctggtatttcagataaccag
tccgagtactctgtgggctctgaggaggaggatgaagacttcgatgagaggccagaaggt
tctcgccgacagtcccgtcgccagatgaggaacgagcgagacaagccacttccccccctg
ttggccagagtagggggaaacttggaggtattgggcttcaacacgcgccagaggaaagcc
ttcctaaacgcggtgatgcgttggggcatgcccgcacaggacgccttctcctgccagtgg
ctggtcagagacctgaggggcaagagtgagaaggagttcaaggcgtatgtctctctgttc
atgcgtcacctgtgtgagcccgtggccgacggtgccgagacgtttgccgatggcgtgccg
agggagggcctgtgtcggcagcctgtgctcacccgcatcggagtcatgtccctggtcaag
aagaagatccaggagtttgagcacatcaatgggcggtggagtcttccagaactgaagcca
gagatgaagccagaggccctgagaccagaggtcagtgtgtcttcttcctccagagcctcc
tcccctggtgggaccatgaagaccgctacgcccacccctgaccccagctgtacctcagac
aacaccccctgcacctcaaaaccagctacccctgctccgtcggacaaactagagaagaac
gggaaagatggagagaaggaagaggaagatgaggagggtaaggcctcatctgagccagag
caagatggcgagaaggagaagaacgaggggaaggaggaagagagcaacaagagtgcagac
cctgaagagactccaatctctaccaaagaagcactacaagaattatccccttgcacaaca
acagacaaggaggagaagggtacaaaagaggagaaggaggggaaagaaaccaaaacgact
gacacccttccggccctagtggaggagaagaaagttgaggaggagagtaaggaggagggg
tccttcggggaaacaactaagcaagggtcggaggtcaaacatgagaaaccaggtagtgta
acactctcacctagagagaaggtggaggaggagaaagagaaggacaacaacaaggaaaag
gacatggagaagagtgaggaggcccctgtccccacagaagggccagacaacatggaaagg
atggagcgacagcaaccctctgacgtgatgaaagaggaagtaaaaggtgaaaaggatgct
gggaaagaagtggcgaaggaggaggttgccaaagatgccttgccaaaaccccccatcacc
ccccccgagcgacggcgcttcatgttcaacattgctgatgggggcttcacggagctgcat
acgctgtggcagaacgaggagcgggccgccatctcctccgggaagatgaatgagatctgg
caccggcgacacgacttctggctgctggcgggaattgtacttcatgggtacgcgaggtgg
caggacatccagaacgatccccagtttgctatcgtcaacgagcccttcaagtcgcaggcc
aacaagggcaacttcctggagatgaagaacaagttcctggcccgccgcttcaagttatta
gagcaggccctggtgatagaggaacaactgagacgggcagcctacctgaatatgacccag
gacccggtccaccccgccatggcgttgaacgcccgttatgccgaggtggagtgtctggcc
gagtcccaccaacacctcagcaaggagtccctggccgggaacaaaccggccaatgccgtg
ctgcataaagtgctgaaccagttggaggagctgctgagcgacatgaaggctgacgtgaca
cggctccccgccacgctgtcccgggtcccgcccattgccgcacgtctgcagatgtcagag
aggagcatcctcagcaggctggccagcaagggcactgacacacacccgcccccgaccatc
cctccaggaccctacgccactcctcagaactttgggccccccttcacccccacccccctg
ggagtcttacccatgggaggagccaactacagccagatgcctcctggatccttcgtatca
gtgttgaacggtcctcctgtgtcagtgaagaaggagagggaagcagagcagctcctgagc
aggagagaccagcgccgtggagaggtcatctgtatcgacgactga
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integrated database retrieval system
