Oncorhynchus mykiss (rainbow trout): 110531765
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Entry
110531765 CDS
T07259
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110531765 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
omy04091
]
110531765 (frem1a)
Lectins [BR:
omy04091
]
C-Type lectins
Lecticans
110531765 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Big_9
Calx-beta
Motif
Other DBs
NCBI-GeneID:
110531765
NCBI-ProteinID:
XP_036843506
Ensembl:
ENSOMYG00000001711
UniProt:
A0A8C7LRN8
LinkDB
All DBs
Position
9:complement(23845242..23876940)
Genome browser
AA seq
2200 aa
AA seq
DB search
MGLQRGALRWALPWLLLVVAGGSHSSLVKTNLGLRVKRGQPAYLQEGDLQFHIPPVKDAC
KVEVVLNEPITQRVGTLTPQVFDCHYLADDIKYVHNGCPILKEDTVKLRLYRFTETETFT
EVFFLRVEIMEPDCNIIKLGPKSLVVPEFYGLSDTLDGNVVSFHYERMTSLECSIRVNTH
ETHLPGHGQLVIGEPDQLEARGDEPESFIPLRQQLDNKARAMCKTEDCLNGLKLAKVIKV
PCDEFLVMGLRYQHIDPPSPDVDYIALRLDLTDTRSGSIYQSERAWIPVHIPGAVPNQPP
KPAFMSMFILEVDQFILTPLSTATLDAEDGETPKQLLVFNITKPPLEGFITHLSDHTRPI
FSFTWVDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSAPIMVHMSVRTADTNAPR
VSWNMGLSLLEGQSRPITWDQLQIVDNDNFKAVRIITVDGLQHGRLTLRGGKGFMFTVAD
ILAGAVRYHHDDSDTTKDFIIFRITDGRHQTRHKFPINILPKDDSPPFLITNTVLELSEG
HTALLRGSILQASDMDSSDDYILFNITRPPQAGELMKIPGPGLTGYPVSRFLQKDLFHSV
VYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVIVVHINPVPDQPPKEVPGVTRCLVVKE
TEVVHLTKKQLHFIDLESPDSELTYTVTTPPFYSRSYGGLDAGRLFLVDSIAKFTKDAEA
PVLRLFTQHAVNYMKVAYMPPILDIGPYPQHIQLVLSVTNQQGTTVAGICFNITVVPVDN
LAPEVHMKPLTVDEGGECWVGPDHLLLEDHDSTEESLRVELKREPQHGAVQLDGFSMKPG
QNFTVRDLKSLKVRYHHDSSETVGDAIELIATDGINAINFVLEVKVTLINDEVPVLMPGL
KPVLDCAEGQEVIITAEYIYATDADSDDNSLTYMIARQPYHGVVRKNAIVVDRFIQADIV
AGRITYEHTGAEIGLAPRHDTITFVISDGQAENAPSCCNDRGDTLKRGRTQVQESLPLYD
LKVTVFPVDSQMPSIATGDVFVVDEGGVAPITVAHLSASDVDTPLEELVISLVSPPQYGY
IENILPSPGFEKSNTGISIASFSYSDIMNRHVNYVQSRHQRIEPTADQLMLCVSDGKHTS
AHVHFYIIINPINDEVPEFLARNITVREGHMKELDPAVINAVDLDIPKNNLLFSVVQAPQ
HGTIMGRTYGNDVPANGRPVNRHRDAEVLVQDFTMQELRNGMSLMYMHDDSENMVDSFTI
QLNDGKHQLQRHVMVNVLPVNDEEPRVIRNNGLEVEAGEARLISSAILFAQDSDTTSQEI
VYMLESVPTQGLLQVKVGSDWVTQSAGMNCTQETVDMNLLRYLHTGPLGHTQDFFVFHLL
DGKNRSPAQHFHISLRDMEKGDIAIFVKPVKTSRGERVVLTTDVLLAMDGTDKPEELFYI
VTVPPGNGHMEYIKHPGVAISTFSQMDIAANLVGYVHDNRATASLETLQFVVSNGKATRN
GTLEIYVETTDHVLPSLTCNSGLRVPQDSSMAVTPDALALSDPDTPPSDLLFFLAQPPQY
GTLLRGGVPLATGGNFTQWDLQELEVTYRHGGGPSQIDRFAFTASDTTNRSFLLEGRVQT
EPVIFTIQIEPLDSSAPEVVQLQSLWKAEVLSDGRYGIYLSYRELRAQDGNTKDEDLTFH
IHRPPYFGYLENTIKGSFIQQRFTQRDLSKRTIVYIIDPATEALSDSLEFRVSDPLGNTG
PSHTLELKWSRVELAVSEYQACEDQGPVSLDVLRKGNMAESSYITIKVREVTATAGKDFT
LSPSSLIQFDPGVSKRSWRIEITQDHLEEAEETFEVTLVSPEGTVVGSTSKALVKIKDSG
KGQCGSSRAPMGSSLGGKQVQSGPYPQHGSIHLETLPLAKGDQQMTWTRGDGMPQSVPAA
GPATPHMKLRAMANRKTIPPSSVHRNGTETVFTYHGIMSVRLEDDKSPSRKGRKANIQVT
SRGRQQHAAAAPPVAPNLNPKPVPKTKSDSLLPRTMPEKPNKEPSPSSSPKPCVPELMGL
LHFNQSSGGLLRCNGVSWKPWAPTDEMVSAQNCRKGWTYHSGNCYFLSTERKSSWSTAIR
ACRESHQANLVSVFSKADMDWLWDFSGRKPFWIGLNDRESRGRWEWVGGEPITYTNWRKS
PARGKRKGTRRCVLVWRRAKWQIRDCKTGRGHLYMCYIKT
NT seq
6603 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacagagaggggcactgcgatgggcacttccctggctgctgctggtcgtggct
ggagggtcacacagctccctggtgaagactaacctagggttgagggtgaagaggggccag
ccggcctacctgcaggagggggacctgcagttccacatccccccggtgaaggatgcctgc
aaggtggaggtggtgctcaacgagccaattacgcagagggtggggacgctgacaccccag
gtgtttgactgccactacctggctgatgacataaagtatgtccacaatggctgcccgata
ctaaaagaagatactgtcaagcttcgactctacaggttcacagagacagagacctttaca
gaggtcttcttcctgcgtgtggagatcatggaacctgactgcaacatcatcaaactaggg
cccaagtccctggtggtgccagagttctacggcctgtccgacacgctggacggcaacgtg
gtgtccttccactatgagaggatgaccagtcttgagtgtagcatccgtgtgaacacccac
gagacacacctcccgggtcatggtcagttggtcattggggagccagaccagctggaggcc
agaggggacgagccggagagcttcattcctctccggcagcagctagataacaaggccagg
gccatgtgtaagactgaggactgcctgaacggcctgaagctggcaaaggttatcaaagtg
ccctgtgatgagttcctggtgatgggccttaggtaccagcacatagacccaccgtctcca
gacgtggactacatcgccctccgactggacctcaccgacaccaggagcgggagcatatac
cagtcggagcgggcctggatacctgtccacatccctggcgctgttcccaaccagccgccc
aagccagccttcatgtccatgtttatcctggaagtggaccaattcatcctcacgcccctc
tccactgccaccctggacgcagaggacggagagacccccaaacagctgctggtgttcaac
atcaccaagccccccctagagggcttcatcacccacctgtcagaccacacgcgacccatc
ttctccttcacctgggtggacctcaacgacatgcttatcggctaccagccacccaactca
tcccacacccagcgtaggaactatgaggtggagtttgaggtacatgacttcttctttgag
aagagcgccccgatcatggtccacatgtcagttagaacagcagacaccaatgcacccagg
gtgtcctggaacatgggtcttagtcttcttgaaggtcagtctcgtccaatcacttgggat
cagctccagattgtggacaacgacaacttcaaggctgtacgcatcatcactgtcgacggc
ctccagcatggcaggctaacactgagaggtggcaagggtttcatgttcaccgttgccgac
atcctcgcgggcgctgtgcgctaccatcacgacgacagcgacaccaccaaggacttcatc
atcttccgcatcaccgatgggcgccaccagacccggcacaagttccccatcaacatcctg
cccaaggatgacagcccaccattcctcatcaccaacacagtgctggagctctctgagggc
cacacggccctgctgagaggatccatactgcaggcctcagacatggactcaagcgacgac
tacatcctgttcaacatcacccggccaccgcaagctggagagctcatgaagatccctggt
cctggactcactggttatcctgtcagccgtttcctgcagaaggacttgttccactctgtg
gtctactaccgtcatctagggaatgaggtgtttgatgactccttcgaagtggtgctctcg
gacttccatgacccacccaacctttcagaacctcaggtcatagtggtgcacatcaaccct
gtgcctgaccagccacctaaagaggtccctggggtgactcgctgcctggtggtcaaagag
acagaggtggtccacctgaccaagaagcagcttcacttcatcgacctggagtcccctgac
agcgagctcacatacactgttaccactccgcccttctacagcaggtcttatgggggcctt
gatgcagggaggctgttcctggttgacagcattgccaaattcaccaaggatgctgaagcc
ccagtgttaaggttattcacacagcatgcagtcaactacatgaaagtggcctacatgcct
cccatcctggacattgggccttacccgcagcacatccagttggtgctctccgtcaccaac
cagcagggaaccacagtcgctggcatctgcttcaacattaccgtggtgccagtggacaac
ctggccccagaggtgcacatgaaacctctgacagtggacgagggtggggagtgctgggtg
ggtccggaccacctgctgctggaagaccatgactctacagaagagagcctgagagtggag
ctgaagagagagcctcagcacggagctgttcagctggatggcttctccatgaaaccgggc
cagaacttcactgttcgcgacctgaaaagcctaaaagttagatatcatcacgacagctcg
gaaacagtgggcgatgccattgaattaatcgctaccgatgggattaacgcaatcaacttt
gttctggaagttaaggtgacactgatcaatgatgaggttccagttctcatgccaggtctg
aaacctgttctggactgtgcagagggacaggaagtcatcatcaccgctgagtacatttat
gccacagacgcagacagtgacgataacagtctgacctacatgattgcccgtcagccatac
catggcgtggtgcgcaaaaacgccattgtggtcgatcgcttcattcaggcagacattgtc
gcagggagaatcacctacgaacacacaggagcggagattggactagcccctcgacacgac
acaatcacgtttgtgatatccgacggccaggcggagaacgctccgtcatgctgtaatgac
cgaggggacacattgaaaagaggcaggacacaagtccaggagagcctgcctctgtatgac
ctgaaggtcaccgtgttccctgtggacagtcagatgccttctattgcaacaggagatgtg
tttgtggtggatgaggggggtgtggcccctataactgtagcccacctcagtgcctcggat
gtggacactcccctggaggagctggtgatcagcctggtctctcctccccagtatggctac
attgagaatatcctgcccagtcctggatttgagaaaagcaacacaggcatcagcatcgcc
tccttctcttacagtgacatcatgaacagacatgtgaactatgtccagtccagacaccag
aggatcgagccaaccgctgaccagttgatgctctgcgtctctgacgggaaacacacctct
gcccacgtccacttctacatcatcatcaaccccatcaatgacgaggtgccggagtttctc
gccagaaatatcacggtgcgagagggccatatgaaggagctggaccctgctgttataaac
gcggtggatctggacatccctaagaacaacctgctgttcagcgtggtccaggccccccag
catggcacaatcatgggccgaacgtatggcaacgacgtgcccgccaatggaagacccgtc
aacaggcacagggacgcagaggtgctggtccaggacttcaccatgcaggagttgaggaat
ggtatgtctctgatgtacatgcatgatgactctgagaacatggtggacagcttcaccatc
cagctgaacgatgggaaacaccagctccagaggcacgtgatggtcaacgtactccctgtc
aatgacgaggagcctcgagtcataaggaacaatggactggaggtggaggcaggcgaggct
aggctgatctccagtgctattctctttgctcaggacagcgacactacctctcaggagata
gtctacatgttggagagcgttcccactcagggactgctacaggttaaggtaggctctgac
tgggtgacccagtctgcggggatgaactgcacccaggagacagtggacatgaacctgctg
cgctacctccataccgggccactgggacacacacaggatttctttgtgttccacctgctg
gacgggaagaaccgctcccccgcgcagcacttccacatctccctcagggacatggagaaa
ggagacattgccatttttgtgaagccggtgaagaccagccgcggtgagcgcgtggttctg
accacagacgtcctgctggcgatggacggtacagacaaacccgaggagctgttctacatc
gttacagtcccccccggcaatggccacatggagtacatcaaacaccctggggtggccata
agcaccttcagccagatggacatcgctgccaacctggtgggctacgtccacgacaacaga
gccaccgcgtcgttggagacactacagttcgtcgtcagcaatggcaaggccacccgtaac
ggcaccctggagatttacgttgagaccaccgaccacgtgctgccatcactgacctgtaac
agcggcttgagagtccctcaggactcctccatggcggtgacccctgacgccctcgccttg
tccgaccccgacaccccacccagtgacctgctcttcttcctggcccagcctccgcagtac
ggcacactgcttcgtggcggtgtcccgctcgctaccggtggcaacttcacccagtgggac
ctgcaggagctggaggtgacttacaggcacgggggcggcccgtcgcagatcgaccgcttt
gccttcacggcctcagacactaccaacaggagtttcctgctggaggggagggtgcagacg
gaacctgttatctttaccattcagattgagcctttggacagctcggctcctgaggttgtg
cagctgcagtctctgtggaaggctgaagtcctgtctgacggtcgctatgggatctacctc
tcgtaccgggagctgagagcgcaggacggcaacaccaaggacgaagacctcaccttccac
atccacaggccaccatactttggctacctggagaatacgattaaaggcagctttatccag
cagcgtttcactcagagggacctgagcaaaaggactatcgtgtatatcatagacccagcg
acagaagccctgtcggacagcctggagttcagagtgtccgaccccctggggaacactggg
ccctcccacacgctggagctgaagtggtctcgtgtggagctggctgtgtctgagtaccag
gcatgtgaggaccagggccctgtctcactggacgtcctacggaaaggcaacatggccgag
tcctcgtacatcaccatcaaggtgagagaggtcacagcgactgctggaaaggatttcact
ctgagcccgtccagcctaatccagtttgatcctggcgtatccaaaaggagctggcgtatt
gaaattacccaagatcacctggaggaggcagaggagacatttgaagtgacactggtgtcc
cctgagggaaccgtagtaggcagcacctccaaagcgctggttaaaatcaaggactctggg
aaaggacagtgtggatccagtcgggcccctatgggctccagtctgggggggaagcaggtt
cagtcagggccgtacccccaacatggctccattcatttggagacactaccccttgccaag
ggagaccagcagatgacctggacccggggcgatggtatgccccagtctgtgcccgctgct
gggcccgccacgccccatatgaaactcagagccatggccaacagaaagacgattccacca
tcgtcagtccatcgtaatggaacagaaactgtgttcacgtaccacgggatcatgtccgtg
cgcctggaggatgacaagtctccgtctaggaagggaaggaaggctaatattcaggtgacc
agcagagggcggcagcaacatgcagccgcagcaccaccagtggctcccaacctcaaccct
aaacctgtccctaagacgaagagtgacagcttgctcccacgtacaatgcctgagaagccc
aataaggagccttcacctagctctagccctaaaccctgtgtcccagagctgatggggctc
ctacactttaaccagagctcaggcgggctcctccgctgcaacggggtctcctggaagccc
tgggctcccactgatgagatggtcagtgctcagaattgtcgtaagggctggacctatcac
agcggcaactgctacttcctgagcaccgagcgcaagtcgtcgtggagcaccgccatcagg
gcatgcagggagagtcaccaagccaatctggtgagcgttttttccaaggctgacatggac
tggctgtgggacttcagtggaaggaagccattctggataggtctaaacgacagggagagc
cgaggacgctgggagtgggtgggtggagaacccatcacctacaccaactggaggaagagc
ccggccagaggcaagaggaaggggaccaggaggtgtgttctggtgtggaggagggccaag
tggcagatcagagactgtaagacgggcaggggacatctctacatgtgttacatcaagacg
tga
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