Oncorhynchus mykiss (rainbow trout): 110532011
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Entry
110532011 CDS
T07259
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110532011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110532011
03036 Chromosome and associated proteins [BR:
omy03036
]
110532011
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110532011
Coactivators
SAGA/TFTC/STAGA complex
110532011
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
110532011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
110532011
NCBI-ProteinID:
XP_036843815
Ensembl:
ENSOMYG00000038530
LinkDB
All DBs
Position
9:38021681..38033223
Genome browser
AA seq
945 aa
AA seq
DB search
MAAGSDLLDDAFFNTEVDEKVVSDLVGSLESELTGSGRGNSAVRVQAAANHIGNPAVCGK
SNVQDSKMGLSQELAKPGTSVQAGVINSTRSTMDTAAGTTAAAGSGMTAGHSQSKTGAAG
CVVTVVPDHGEGIGKTGSACVQTLNGSSVVINSHNLVSSASSTVPAVTVVNNGPGSVVEG
NVILPSTSIQTSLMDNAVTSTVVSSQPSVLNSVPTVTLVRPPMHTTGAVTSPSGSNTFLT
SSVNVAHPACSGAQINKSESPKTAIQKTAQVTGTAAAVAKSPSTIAISPGGIRAIAPQVL
APRLPQPQQNAPNIQNIQLPPGMVLVRSESGQLLMIHQQTLAQMQAQSQSPMTPRPATPT
STPPVQITSVQAPGMPLIARQVTPTTIIKQGTPAQTTVPQRPPVLQQNTIVLGGAAATPG
QAPVQPGSAATAVNQRAGTPGATGTPGNPTTTMETLENVKKCKNFLSTLIKLASSGKQSS
ETTASVKDLVKSLLEGKIEAEEFTSRLYRELNSSPQPYLVPFLKRSLPALRQMTPDSTAF
IQQSQLPQASVQPVASSTALTTVALGGTAAAQRLPLNRTTSPGAKGTMHQSPVISPALTP
HSKPGLMVPQQQGALASTQVSLAQSPMVTFRGQSHSRIIMGHPQVVKQLQTVPVVKQALS
PGAKVTLGCQSLLSVAQKNKLKEASGGTFKDDDDINDVASMAGVNLSEESARILATNSEL
VGAVTRSCKDEVFLHTTSLTRRVQEIGRRFGVIDLGPEVINYVSHATQQRLQNLLEKVTE
VAQQKNITFKEDDKYEQVSDVRAQLKFYEQLDQMEKQRKEEQEREILMKAAKSRSRQEDP
EQLRLKQKAKEMQQQELNQIRQKEANMTALAAIGPRKKRKMESPVNGAGAEGSGSGPSSS
GGANSGGSRPQRQRITRVNLRDLLFCLENERETSSSHLLYKGFLK
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatttgctggatgatgcctttttcaacactgaggtggacgagaaa
gtagttagtgatctagttggatctttggagtctgagctcacgggatcgggtcgcggaaac
tctgcagtcagggtccaggctgccgcaaatcacattggcaaccccgctgtatgtggcaaa
tccaatgtccaggacagcaaaatgggactttcacaagagcttgctaaaccagggactagc
gtccaagcgggtgtcattaatagtacgaggtccaccatggatacagcggccgggacgacg
gcggcggcgggctcaggcatgacagcgggacacagtcagagtaagaccggggcagccggt
tgtgtggtaacagtggttcccgatcacggggaagggatcgggaaaaccgggtcggcttgt
gtacaaactttaaatggaagtagcgttgtaataaactctcataatttggtgagttcggca
agcagcacagtgcccgcagtcacagttgtcaacaacggaccaggctccgtggtcgaagga
aacgtaatcttaccctcaacttccattcaaacctctctaatggacaatgctgtcacttca
actgtagtatcgtctcagccgtctgttctaaacagtgtgcccactgtcacgctcgtgagg
ccgcctatgcacaccaccggagcagtcacctcgccgagcgggagcaatacctttctgaca
tcatctgtcaacgtcgctcaccctgcatgttcaggagcacaaatcaacaagtcggagtcg
ccaaaaacggcaatacaaaagaccgcacaggtgacggggacggcagcagctgtagcgaaa
agcccatcgactattgcaatcagtcctggtgggataagggcgatcgctcctcaggtattg
gccccaagacttccgcagccccaacagaatgctccaaacatccaaaacattcagctcccc
ccagggatggtgttggtgcgcagtgagagtgggcagctgttaatgatccaccagcagacc
ctggcccagatgcaggctcagtcccagagccccatgaccccacggccagccacccccacc
agcacgccccctgtccagatcacctctgtacaggctccagggatgcccctcattgcccgt
caggtgacccccaccaccatcatcaagcagggcaccccggcccagaccactgtcccccag
aggcctcctgtgctacagcagaacaccattgtgctaggtggggcggctgccaccccaggt
caggccccagtgcagcctggctcggcggcaacagcagtcaaccagcgagcagggaccccc
ggagctaccgggacaccaggcaatcccactaccactatggagaccctggagaatgtgaag
aaatgcaagaacttcctttccacgctgatcaagctggcatccagcgggaagcagtcgtca
gagaccacggccagcgtcaaggacctggtcaagagcctgttggaaggtaagatcgaagcg
gaggagttcaccagtcggttataccgggagctcaactcctctcctcagccatatcttgtg
cctttcctcaagaggagtctccctgcactgcgtcagatgaccccagactcgacagccttc
atccagcagagccagcttccccaggccagcgtccagcctgtcgcctcctccacagccctg
actacagtggcgctggggggcacggccgccgcacagagactccctcttaacagaaccacc
agccctggggccaaggggaccatgcaccagtcccctgtcatcagcccggccctgacacct
cacagcaagcctggcctgatggtgccccagcagcagggggcgttggcgagtactcaggta
tctctggcccagtcgcccatggttactttccgaggccagtcccacagtcgcatcatcatg
ggacatccgcaggtggtcaaacagctgcaaacagttcctgtagtgaaacaagctctatca
ccaggggccaaggtaacactggggtgccagtctttgctctctgttgcacagaagaacaag
ctgaaggaggcaagcggaggaaccttcaaagatgatgatgatatcaatgacgtggcctcc
atggctggagtcaacctgtcagaggagagcgcccgtatcctggcaaccaactctgagctg
gtgggcgcggtgactcgctcctgtaaggacgaggtcttcctccacaccacctcactaacc
cggagagtacaggagatcggtaggaggtttggggtgattgacctggggccagaggttatc
aactacgtttcccatgcaacacagcagcggctgcagaacctgctggagaaagtgacggag
gtggcgcagcagaaaaacatcaccttcaaggaggatgataagtatgaacaggtgagtgac
gtgcgagcccagctgaagttctatgagcagctggatcagatggagaaacagaggaaggag
gagcaggagagggagatcctgatgaaggctgccaagtctcgatcgcggcaagaggaccca
gagcagcttcggctcaagcagaaggccaaagagatgcagcagcaggagctgaatcagatc
aggcagaaggaggccaacatgacggccctggcagccatcggccccaggaagaaacggaaa
atggagtcccccgtcaacggcgccggggctgagggttctggctctggtccctcgtcatcg
ggtggggccaatagcggaggctccagacctcagcgccagcgcatcaccagggtcaacctc
agggacctgctcttctgtctggagaatgagagagaaaccagtagctcacatctgctctac
aaaggcttcctcaaataa
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