Oncorhynchus mykiss (rainbow trout): 110532038
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Entry
110532038 CDS
T07259
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110532038
04518 Integrin signaling
110532038
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110532038
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110532038
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110532038
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
110532038
NCBI-ProteinID:
XP_021471305
Ensembl:
ENSOMYG00000040994
UniProt:
A0A8C7TZL9
LinkDB
All DBs
Position
9:39685828..39715886
Genome browser
AA seq
1489 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLISIVRCQEEDDQEAGSCIQDAQRYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIRECANPIIQPRECCPICPADARAPTEAVIGAKGQKGEPGEIADVV
GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPQGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD
GSKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGASGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPI
GPQGGPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGVPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ
GAAGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGVTGPRGERGFPGERGGGGSQGLQ
GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE
GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA
GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGGRGAQGGAGAT
GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK
GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGAGGDR
GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP
GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT
GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPAGPAGKDGSNGTPGPLGPSGPRGRSGET
GAAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD
STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNIGSTADAIKVFCN
METGETCVYPSIANVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL
RLLSTEASQSLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVAEDGC
KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
atatccattgtcagatgccaggaagaggatgaccaggaggcaggcagctgcatccaggat
gcccaacgctataacgataaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacagcgggtcagtgctgtgtgatgagatcatctgcgaggagatcagagagtgtgccaac
cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagagccccaact
gaggcggtgattggtgctaagggccagaaaggggaaccaggcgagattgcagatgttgta
ggaccgaatggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa
gctggcgctaagggtgataagggaaatgttggccccagaggcagagatggcgagcctgga
acccccgggaaccccggaccccctggccctcccggacccaacggacccccaggtcttggc
gggaacttcgcggctcagatggctggtggattcgatgagaaagccggaggcgcacagatg
ggagtgatgcaaggacctatgggccctatgggtccccgtggtccacctggcccttctgga
gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct
ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgag
gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga
ttccccgggactcctggtcttcccggaatcaaaggacacagaggtcatcctggtcttgat
ggatctaagggagagggtggtgctgctggagccaagggcgagggtggcgctcccggagag
aacggcgcccctggaccaatgggaccacgtggtctgcctggcgagagaggccgtcccgga
gcttctggctctgctggtgcccgtggtaacgatggcttgcctggccctgctggtccccct
gggcctgttggacctgctggagcacctggtttccctggatcccctggctccaagggagaa
gctggccccactggtgcccgtggagctgagggcgcacagggaccccgcggagaggctggc
acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatcccc
ggagctaaaggatctgctggtgcttctggtattgctggtgcacctggtttcccaggaccc
cgtggcccccccggacctcagggagcaacaggacctcttgggcccaagggccagtcggga
gaccccggtattcctggtttcaaaggagaggctggacccaagggagagcttggccctatt
ggtccccaaggcggccctggccccgctggcgaggagggaaaacgaggagcaagaggagag
cccggtgctgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt
ttcccgggtcaggacggtcttgctggtgctaagggagcccctggtgaccgtggtgttccc
ggcgtgggtgggcctaagggaggcactggtgaccccggccgcgcaggagagcctggtctt
cccggagccagaggtctcactggtcgccccggagatgctggtcctcaaggcaaagttggc
cctggtggtgctgctggtgaggacggtcgccccggcccacctggtcctcagggagcacgt
ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgtgcctggcaag
gcaggagagaagggtctcgtgggtcgtcaaggtctgataggtctgtctggtaaagatggt
gagactggcgctgctggacctaacggccctgctggacctgctggagagagaggagagcag
ggagctgctgggccatctggcttccagggtctgcctggacctgctggccccccgggagag
ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgcaggcgttacggga
cccagaggcgagcgtggtttccctggtgagaggggcggcggaggatctcagggtctgcag
ggacctcgtggacttcctggaactcccggaaccgatggacccaagggagccattgggcca
actggtggtgctggatctcagggaccccccggcctgcagggtatgccaggagagagagga
gctggtggtatccttggagccaaaggtgacagaggtgacaacggcgagaaaggacctgag
ggcgctcctggaaaggatggttccagaggcttgtctggtcccattggtcctcctggccca
gctggtcccaacggcgtgaagggtgagggtggaccttctggcccaactggtgcggctggt
gcccgtggtgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggcttcgct
gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag
aagggagatggtggtgcccctggacctcagggaccctctggggcccctggacctgtgggt
cccactggtgtttctggatctaaaggaggccgcggtgcccagggtggcgctggtgctact
ggtttccctggtgctgctggaagagttggatctcccggtcccaatggtaaccctggtgct
gctggccccgctggtcctgctggtaaagatggtcctaagggagttcgcggtgacgctggc
accccaggaagacagggagatgccgggctgcgtggagttgctggagcccctggcgagaag
ggagatgctggagaagacggcccccctggccctgatggtccttcaggtccccatggtctg
gctgggtctcgtggtattgttggtctgcctgggcagcgtggagagaggggcttccctggt
cttcctggaccgtctggagagcccggtaagcagggagcttctggtgctggtggtgaccgt
ggaccgcctggccctgtgggaccccctggactgtctggacctgcaggagagcccggaaga
gagggcaatgctggatctgatggaccccctggtagagatggatccactggagtcaagggt
gagcgtggtaacactggtcctgctggtgctcctggtgccccgggcgctcccggtgccccc
ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgcccaaggacct
gccggacccgctggaccagctggcgctagaggaatggctggaccccaaggaccccgtgga
gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgtggcttcact
ggtctgcagggtcttcccggacctcccggctccgctggagaccagggagctgctggacct
gccggacctagtggcgctaaaggaccccctggcccagccggtcccgctggtaaggatgga
tcaaacggtacccctggacccctcggaccctctgggcctcgtggtcgttctggagagact
ggtgctgctggtcctcctggtaaccccggacctcctggtcctcctggtcctcccggccct
ggcatcgacatgtctgccttcgctggcctgtctcagccagagaagtctccggatcccctg
aggtacatgagggctgatgaggcatccagctccctgaggcagcacgacgtggaggtggac
tccacactcaagtccctcaactaccagatcgagaacctgcgcagccccgacggtagccag
aagaaccccgcccgcacctgcagagacatcaaactgtcccaccccgaatggaagagtggt
gactactgggtggacccgaacattggcagcacagctgacgccatcaaggtcttctgcaac
atggagaccggcgagacctgcgtgtaccccagcatagccaacgtgccgcacaagaactgg
tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggagga
ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcctg
aggctgctgtccacggaagcgtctcagagcctcacctaccactgcaagaacagcgtggcc
tatatggacgcatccacgggcaacctgaagaaggctctgctgctccagggctccaacgac
gtggagatccgagctgagggcaacagccgcttcacctacagcgtggcggaggacggctgc
aagaaacacacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc
cgtctgcccatcgtggacattgctcccatggacatcggaggagcggaccaggagttcggc
gtggacgtgggcgcagtctgcttcttgtaa
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