Oncorhynchus mykiss (rainbow trout): 110532160
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Entry
110532160 CDS
T07259
Symbol
ybx1
Name
(RefSeq) Y-box-binding protein 1 isoform X1
KO
K09276
Y-box-binding protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110532160 (ybx1)
03019 Messenger RNA biogenesis [BR:
omy03019
]
110532160 (ybx1)
03041 Spliceosome [BR:
omy03041
]
110532160 (ybx1)
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, YB-1/DbpB-like
110532160 (ybx1)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
110532160 (ybx1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110532160 (ybx1)
Spliceosome [BR:
omy03041
]
Common components
Common spliceosomal components
General mRNP proteins
110532160 (ybx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSD
OB_RNB
DUF8529
S1CSD-TOTE-2
Motif
Other DBs
NCBI-GeneID:
110532160
NCBI-ProteinID:
XP_021471492
Ensembl:
ENSOMYG00000021040
LinkDB
All DBs
Position
9:43329368..43335690
Genome browser
AA seq
379 aa
AA seq
DB search
MAGDSPLHSFSFLPVRSATGERKVESPKAAAPTTAGPGYHLAPGNTLESHRRHYQPETMS
SEAETQQPPEPAVDSESPPSPPATASAGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKE
DVFVHQTAIKKNNPKKYLRSVGDGETVEFDVVEGEKGAEAANVTGPAGVPVQGSKYAADR
NRYRRYPRRRGPARDGEYPDNYQSDGEGEGERPPRKSRESAESAPEGEMQPQQRRPPFPG
RRRYPPYFVRRRYGRRPPYTNAPRGEMTEGGEGDENQGGPDQGNKPMRQNYYRGFRPSRG
GGPPRPRPVRDGDGENKENQDGDGENQEPRQRRYRRNFNYRRRRPQTGGKPQDGKEAKTD
GEPSTEKTPAPAAEQGGAE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggctggggatagtccactgcatagtttttcgttcctcccagttcgatcggcaacggga
gagaggaaagttgagagcccgaaggcagcagcccccaccaccgccggcccaggttaccat
ctagcaccgggaaatacactagagagccaccgccggcattaccaaccagaaaccatgagc
agcgaggccgagacacaacaaccgccggagcctgctgtggattcggagagcccacccagc
ccgccagctacagcttccgcgggggataagaaggtcatcgcaactaaggttttgggtaca
gtcaaatggttcaacgtcagaaatggatacgggttcatcaacaggaatgacacaaaggaa
gacgtctttgtccaccagactgccataaagaaaaacaacccaaagaaataccttcgcagt
gttggagatggcgaaactgtggagtttgatgtggttgagggggagaagggagcagaggca
gccaatgtgaccggcccagcgggtgtcccagtccaggggagcaagtatgcagctgaccgg
aaccgctacaggcggtacccccgcaggaggggcccagcccgtgacggcgaatacccggac
aactaccagagtgacggcgagggtgaaggagagcgcccaccccgcaagagccgcgagagt
gctgagagtgccccagaaggagagatgcagccccagcagcgcaggccccccttccccggg
agacggcgctaccccccatactttgtacgtagacgctacggccgtcggcccccgtacacc
aacgcacctcgcggagagatgactgagggtggcgaaggtgacgagaaccagggaggtcca
gaccagggcaacaaaccaatgagacagaactactacagaggcttccgaccaagcaggggt
ggcggtccaccccgtcccagaccggtgcgggacggcgatggggaaaacaaggagaaccag
gatggtgatggtgagaaccaggagccccgccagcgccgctaccgccgaaacttcaactat
cgccgcagacgcccacagactggcggcaagccccaggatggcaaggaggccaagactgac
ggcgaaccatctacagagaaaacgcccgctcccgcggccgagcagggcggggctgagtag
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