Oncorhynchus mykiss (rainbow trout): 110532316
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Entry
110532316 CDS
T07259
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110532316 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110532316 (exosc10)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110532316 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
110532316
NCBI-ProteinID:
XP_021471773
Ensembl:
ENSOMYG00000018962
LinkDB
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Position
9:51044415..51056932
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AA seq
934 aa
AA seq
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MVRSVAALYSSPVSGAIAHLMLVLPIKPNGEEEKPSAVVSCHSHVQKLEMDSSNSDKQNN
NQSVNEDPAGVDNEFCPGFKDVDAFVKYGLGTVVAATKASASLPQVGDEYDLYRSFPGFQ
EFCETQGDGLLHCMSQIMHHHGCRAHMRDRNKLTGLEERFDLVVDSNDVILEKVGILLDD
AAGVNRSQQPVMPAGFQPPKIVVSSWNRKGGDSGSGRSSETFRLLQAKNVTRPQLKFREK
VDNSNTPFTPKIFVKPNAIKPLPSYFTNKHIRKERPEDLDVPAALADFIHQQRTQEHVED
MFAHPYQYELDHLALPENLLSKPEPQMYKPLAETKCSFIDTLEDLVAVNEKLAKTSEFAV
DLEHHSYRSFLGITCLMQISTRDEDFIIDTLELRSELYILNEAFTDPAIVKVFHGADSDI
EWLQKDLGLYIVNMFDTHQASRTLNLGRHSLDHLLKLFCNVDSDKRYQLADWRIRPLPDE
MFQYARADTHYLLYVYDRLRVDLWEVGNGQPALLQMVWHKSKDISLKKYMKPLFTEDSYM
DLLRKQKKAFNTQQLTAFRLLYGWRDKLARQEDESTGYVLPNHMMIKISDILPKEPQGII
ACCNPVPPLVRQQVNELHLLVQQAREMPLLKAEIVADKKKTLTPIKKPEIPLFGPHDTSR
VSESDIPSFTPDELSTKKGALFSEEEQGEEVDMHKMMGLVVSAKITLFEEDTVKDPGHLT
VAQQKACRVVESFQNPFRMYLPSNDIHISKNAKFDPSTKIYEISNRWKLQSVEQQQKEVE
AKKKAKEEAKAVAEERKKAKQSYQESLQNVATVRQQASESIKPGGKKRERVASETGESTP
KPNKKLMKAAVKKNEDSTTPLVFKPYDYSQSDFKVFAGAKGNDGKQFDPDRQGHEPRKKK
NAKAQKSNACAGNRSMSFFGGKSERGFHRNWPKR
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttctgtcgctgctctatactccagtccggttagtggcgctattgctcatcta
atgttagtgttacccataaaacccaacggtgaagaagaaaaaccaagcgcggttgtttcc
tgccactcgcatgtacagaaattagagatggattcttcaaacagtgacaaacaaaataat
aatcaatctgttaacgaagacccagctggtgtggacaacgaattttgtcccggtttcaag
gatgtggatgcatttgtgaagtatggactgggcactgtcgtagcagctactaaggcatct
gccagtctaccgcaagtaggggatgaatatgacttatatcgcagcttcccgggatttcaa
gaattctgtgaaactcaaggagatggactgttgcattgtatgagtcagataatgcaccac
catggctgcagagctcacatgagagaccgcaacaaactgacggggttggaggaaagattt
gacttggtggttgattccaatgatgtcattcttgagaaagtgggtattctgcttgatgat
gctgccggagtcaacagaagccagcaacctgtcatgcccgcaggttttcagccccctaag
atcgtcgtatccagttggaatcgtaaggggggtgactctggttctggacgtagttcagag
acattccgactcctccaagccaaaaacgtcaccagacctcagttgaaattccgtgaaaaa
gttgacaatagcaacacaccgtttactccaaagatcttcgtcaagcccaatgcaataaaa
ccacttccttcatattttaccaacaaacacattcgcaaagagagaccagaggatttggat
gtccctgccgccctggctgatttcattcaccagcagagaactcaggagcatgtagaagac
atgttcgctcacccataccaatacgaactggatcaccttgcgttacccgagaatcttctg
tccaagcctgaaccccagatgtacaaaccacttgctgagacaaagtgctcattcattgac
actctggaggatctggtggcagtaaatgagaaactggccaagacgtcagagtttgcagta
gatctggagcaccactcctacagaagttttttgggcatcacctgcctgatgcagatttca
acacgggatgaagacttcattatagacaccttggagctgcgtagtgagctgtacatactc
aatgaggctttcacagatcccgccatcgtcaaggttttccatggtgcagactctgatatt
gagtggctgcaaaaggatttgggcctttacattgtcaacatgtttgacactcaccaggcg
tcacgtacccttaacctgggcaggcactcgcttgaccacttgcttaagctgttctgcaac
gtggactctgacaaacgctaccaactggcagactggagaatacggcctttgccagatgag
atgtttcagtatgcccgggcagatacccactacctcctctatgtctacgatcggctgagg
gtggacctgtgggaagtgggcaatgggcagcctgccctgctgcagatggtctggcacaaa
agcaaagacatctcattgaagaaatacatgaagccgctcttcaccgaggactcctacatg
gacctgctgaggaagcagaagaaggcgttcaacacgcagcagctaactgccttccgactg
ctgtacggctggagggacaagctggccagacaggaggatgagagcactggatatgtcctg
cccaatcatatgatgattaagatctctgacatcctgcccaaagagcctcaaggcatcatc
gcttgctgtaaccctgtcccaccattggtgcggcagcaggtcaacgagctccacctattg
gtgcagcaggcccgggagatgccccttctcaaggctgaaattgtggctgacaagaagaaa
acactcacgcccataaaaaagccagaaattcctctttttggtcctcatgatacatccaga
gtctctgaaagtgatatccccagctttaccccagatgaactctcaaccaaaaagggggca
ctcttttctgaagaggagcagggagaggaggttgacatgcataaaatgatgggtctagta
gtttcagcgaaaatcacattgtttgaggaggacaccgtcaaagaccctggtcacctcaca
gtggctcaacagaaagcatgcagggttgtcgagtcatttcagaaccctttccgaatgtat
ctaccgtcaaacgacatccatatctccaaaaatgctaagttcgacccctctacgaaaata
tatgagatcagtaatagatggaagctgcagagtgtggaacagcagcagaaggaggtagag
gccaaaaagaaagcgaaggaagaggcaaaggcagtagcagaggaaaggaagaaggccaag
cagagctaccaggaatcacttcaaaatgttgcgactgtgcgccagcaagcttcagaatct
ataaaaccaggaggaaagaaaagggagagggttgccagtgagacaggagagtcgacccca
aaacctaacaagaaactaatgaaagctgctgtgaagaaaaacgaggactctacaacacct
ctagttttcaaaccgtatgactacagccagtcagatttcaaagtctttgctggggccaaa
ggaaatgatggtaaacagtttgatccagacagacaaggtcatgaacccaggaaaaagaaa
aatgcaaaagcacaaaaatcgaatgcctgtgctggaaaccgaagtatgtccttttttggt
ggaaaatccgaaagaggattccatcgtaactggcctaaaagatag
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