Oncorhynchus mykiss (rainbow trout): 110532911
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Entry
110532911 CDS
T07259
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110532911
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110532911
09142 Cell motility
04820 Cytoskeleton in muscle cells
110532911
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110532911
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110532911
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110532911
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110532911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110532911
NCBI-ProteinID:
XP_036843197
LinkDB
All DBs
Position
9:10886227..11109542
Genome browser
AA seq
1690 aa
AA seq
DB search
MKFWICVLAVSWAVEATHGGTSQEPCNGLDCSGGCNCNPEKGGRGRPGALGPVGPGGPEG
FPGDQGPLGQKGEKGHFGRMGPSGLKGDKGPMGVPGFPGNDGVPGHPGQDGGRGLPGFDG
CNGTQGDPGPRAVDGGIPGASGLPGPTGPKGQKGEPVYVGTREGFPGLPGLDGVPGPRGP
NGRPGDIGPSGPDGILGNPGPPGPPGPVGSPSLGFRGEPGAKGNTGPPGPRGVPGNEPLV
GSSITTIYKGDKGEEGYKGVRGPSGRPGPPGPFGYPGEKGENGILGYPGGRGPPGFNGPP
GSPGRPGFTGSPGFPGQPGYSGPKGDQGEQGPPGPPIYADTQGLAVQGAPGDNGIDGFPG
QPGDTGSPGFPGQPGRPGDSFGDGRGGSPGFPGTLGPKGERGNPGRQSYGPEGLPGGPGL
PGPPGPPGQPGRSVNIQPGRFDNLPGAPGRPGGQGPPGASGYKGPKGELGDCNCLGGGTT
GGVGAPGAPGSDGRPGAFGRKGESGDPGIPGFGGQPGTPGRVGERGFFGRKGEKGASFYP
SFSGGIQGEQGAQGLRGPPGNMGRPGRDGLPGSPGQPGPPADVDGYGTIGERGFPGFSGA
KGRAGEPGENGIGYQGSIGPRGFPGDSGFAGLPGQPGLPGPPGDSCGQEGVNDAEGGLTL
PCRLPGEDGIPGLPGIPGRLGPKGEPGFPGGPGRPGFDGGKGERGDPGYGGQPGPQGFPG
PRGDAGGPGIPGEGRPGAPGKNGLPGRPGGKGRPGEVLGSSTGLPGTPGFPGGPGDKGEP
GASGLPGGSGFDGRSGIPGAKGERGTDGYPGTLGLPGLPGDRGNGFPGPAGPAGSKGFPG
SPGYPGLKGARGDTGFPGPTGRKGQPGQPGGDGSSGLRGLLGPPGPGGRNGIPGGPGRKG
ESGYPGLVGFPGMPGNPGRPGGPGGKGAPGFSGKDGLPGDFGAPGPKGDQGYRGLSGPPA
LPPRVDYLEKGQKGDNGANGLPGFPGPRGDKGFPGQPGRQGLPGLPGYADRAKGEPGLPG
LPGRPAGPGYPGPIGSPGIIGFPGMPGPRGDDGRPGFPGNPGVPGQPGAKGERGDSSGYP
GSPGAKGESGTPGFPGGQGANGAPGDNGFPGGPGFSGQKGEAGVPGRPGLLGTPGFTGAK
GLNGYPGGRGLDGTTGRPGSPGSSGEKGLPGSPGLDGLNGLAGPNGLPGTPGYSEEGRPG
TPGAAGLKGERGSSIPGPPGYNAEMGARGESGGPGMTGFPGLPGRRGETIGSNIPGPLGD
PGLPGLDGEEGYGGPPGPPGPPGPSTAQGDRGDAGLPGFSGTPGRRGDPGGPGGPGREGS
PGFNGERGDSGYSGVSGTKGYPGDPGYYGGKGPKGRKGSSGRKGPPGITLPPSNFETPYG
DLGGPGLNGAPGAMGEPGNPGIPGRGGPKGRPGAVGRLGRNGGSGLDGPRGDPGSPGFPG
PSGSQGLPGKPGLQGPPGSVARSRSVGFTLVKHSQNNQVPMCPQGMSRLWEGYSLLYVEG
QEKAHNQDLGMAGSCLPRFSTVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVGEEA
ISQYISRCSVCEAMSQAVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQSLVS
PGSCLEDFRATPFIECNGAKGTCHFFANKYSFWLTTVEPNREFNPPPMDTLKGGNQLSRV
SRCQVCSKIL
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctggatttgtgtacttgctgtcagctgggcagttgaagcgacacacgggggg
accagccaggagccctgtaatgggctggactgtagtggaggatgtaactgtaacccagag
aaaggtggcagggggcgcccaggggcattggggccagtaggacccggtggaccagagggg
ttcccaggcgaccaagggcctttagggcaaaaaggagagaagggccacttcggacgcatg
ggcccctctgggctgaaaggagacaaggggcccatgggcgtaccagggttcccaggaaac
gacggagtcccaggtcacccaggtcaggacggtggcaggggtctaccagggtttgatgga
tgtaatggtacccagggagacccaggtcccagagctgtagatggaggaatacctggagct
tcaggactccctgggcctacgggtcctaaagggcagaagggagaacctgtatatgttgga
accagagagggatttcctggtttacctggactggacggtgtacctggtcctagaggccct
aatggaaggcctggtgacatcggccccagtggtcctgatggaatccttggtaatccaggt
ccccccggtccccctggtcctgtagggagccccagcctcggcttccggggggagccagga
gctaagggcaacacggggccacccggacctcgaggcgtgcccggcaacgagccgctagta
ggctcatctattaccactatctacaaaggagataagggggaagagggttacaaaggagtg
cgtggaccatctggtagacccggcccacctggtccttttggctatcctggtgagaaggga
gagaatggaattctggggtatccagggggacggggtcctcctggttttaatggacctccc
ggatctccaggaagaccaggattcacaggcagtccagggttccccgggcaaccaggctac
agtggacctaagggtgaccagggggaacaggggcctcccgggccccccatctacgcagac
acacaagggttggctgttcaaggagcaccaggtgacaatggtatcgacggcttccccggc
caacctggtgacactggctctccagggtttccaggacaaccaggacgaccaggcgactcc
ttcggcgatggtcgaggaggcagcccagggttccctggcaccttaggacctaagggagag
aggggtaaccctggcagacagagctacggccctgagggcctaccaggaggaccaggatta
ccaggaccccccggacctcccggacaaccaggcagatctgtcaacatccagcccggcagg
tttgacaatctaccaggagcgccaggacgaccaggaggccagggaccacctggagccagc
ggatacaaaggacccaaaggggaactgggtgactgtaactgcctgggaggaggcaccacg
ggtggggtgggggccccgggggctcctgggtctgatggaagacctggtgccttcggcagg
aagggcgaaagtggagacccaggcatacccggtttcggaggacaaccaggaacacctggc
cgtgtgggcgagaggggtttcttcgggcgtaaaggagaaaagggtgcctccttctacccc
tcgttcagcggagggatccagggtgaacagggggcccagggccttcgagggccccctgga
aacatgggccgacccgggagagacggacttcctgggtcccccggacagcctgggcctcct
gctgatgttgatggctatggaaccattggagagagaggattcccagggttctcaggcgcc
aaaggtcgcgccggtgaacctggagagaacgggattggctaccagggttccatcggaccc
cgtgggtttccaggcgactcgggctttgcggggttaccagggcaacctggtttacctggc
cctccaggtgacagctgtgggcaggagggggttaatgatgcagagggagggctgacgcta
ccatgtcgtctacctggtgaggatggaatcccaggcctccccggaatacctggaagacta
ggtcccaagggcgagccaggtttcccaggtggtcccggtcggcccggttttgacggaggg
aagggagagagaggagacccaggttacgggggccagcctgggccacaaggtttccctggc
cccagaggagatgcgggtggcccaggtatcccaggcgagggtcgtccaggggcaccaggg
aagaacgggctcccggggcggccaggggggaagggccggccgggggaggtgctggggtcc
tcaacagggctccctggaacacctgggttcccaggaggaccaggagacaagggagagcca
ggagcatcaggacttcccggaggatcaggttttgatggtcggtcgggcattcccggagct
aagggtgagcgcggtacggatggctaccccggaactctaggtcttcccggacttcctgga
gacagaggcaatggatttcccggtcctgctggaccagccggaagcaaaggatttcccgga
tctccaggctaccccggtttaaaaggagccagaggtgacacgggcttcccaggcccaact
gggaggaagggacaaccaggacaaccaggaggggatggatcatcaggactcaggggcctt
ctgggaccgccgggccccgggggaagaaacggcatccctgggggaccaggaaggaagggc
gagagcggttaccctggactggtaggtttccccggaatgccaggtaaccctggaagacct
ggtggaccaggaggtaaaggagctccggggttctcaggaaaagacggcctgcccggtgac
ttcggagcgccaggacctaaaggtgaccaaggttaccgtggtctctctggcccacccgct
ctgccccccagagtagattacctggagaagggacagaagggcgacaacggtgccaacgga
ctacctggtttccctggacctagaggtgacaagggtttcccaggccagcctggtcgtcag
ggtttgcccgggctgcctggttatgctgacagggctaaaggggaaccaggactccccggt
ctccctggacgcccagccgggccaggctacccaggccctattggatctcccggtatcatc
ggtttccctggcatgcctggaccaaggggtgacgatggcaggcctggtttccctggtaac
cctggagtccctggtcagccaggtgctaaaggggagagaggtgactcatccggctacccc
ggaagtcccggagctaaaggtgagtccggaacccccggtttcccaggtggccaaggtgct
aatggcgcccccggcgacaacggtttcccagggggccctgggttcagcggacagaaggga
gaagcgggagttcctggaagacccggactcttgggtacccctggtttcactggggctaag
ggtctgaacggatacccaggaggaagaggtctcgacgggacgactggccgccctggctcc
cctggatcatctggagaaaaaggtctgccgggatctcctggtcttgatggactcaacgga
ctggctggaccgaacggtctaccaggaaccccgggttatagtgaggaggggcgccccggc
acccctggagcggccggtttgaagggagagaggggatcctccatcccaggacccccggga
tacaacgcggagatgggagcgaggggagagtcagggggtcctggtatgacgggcttccca
ggtctgcctggtcgtcgtggggagacaatcggctccaatatccctggacctctgggagac
ccaggcctgcccggactcgatggagaagaaggttacggtggtcctccaggccccccaggc
ccaccggggcccagtacggcccagggagacaggggtgacgctgggctacctggcttctcc
ggcacccctggaagacgtggagaccctggaggtcccggtggcccaggaagggaaggcagc
cctgggttcaatggagagagaggcgactctgggtacagtggagtgtcaggaaccaaaggc
taccctggagatccaggatattacggagggaaaggacccaaaggaaggaaaggttcttct
ggtcgtaaggggcccccaggtataactttaccgccctcgaacttcgagactccctacgga
gacttgggaggccctgggctcaacggagctccaggggccatgggagaaccaggcaatccc
ggcattccaggcagagggggtcctaaaggcaggcccggtgcggtggggaggctggggagg
aacggagggtcaggtctggatggacctcggggagaccctggttctcctggtttccctgga
ccttccggatcacaaggtctgcctggtaagcctggtctgcagggtccccctggcagtgtg
gcccgcagcaggagtgttggtttcaccctggtgaaacacagtcagaacaaccaggtaccc
atgtgtccccagggcatgtcccggctctgggagggatacagtctgctgtacgtagagggg
caggagaaggcacacaaccaggacctcggtatggcgggctcctgcctcccccgtttcagc
actgtccccttcctctactgcacgcccaacgagatctgttactacgccagccgcaacgac
aagtcctattggctgtccaccactgcgcccatccccatgatgccggtgggagaggaggcc
atcagccagtacatcagcaggtgctccgtgtgcgaggccatgtcccaggctgtggccgtc
cactcccaggacctcaccatccccacctgccctgctggctggaggtccctctggatcggg
tactccttcctcatgcacacagctgccggggcagagggcggaggccagtcccttgtttca
cccggctcctgtctggaagacttccgtgcaactcccttcatcgagtgtaacggggctaag
ggcacctgccacttctttgccaacaagtacagcttctggctgaccacggtggagcctaac
cgcgagttcaacccccctccgatggacacactgaagggaggcaaccaactcagcagagtc
agtcgctgtcaggtctgcagtaagatcttgtag
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