Oncorhynchus mykiss (rainbow trout): 110533227
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Entry
110533227 CDS
T07259
Name
(RefSeq) serine/arginine-rich splicing factor 1B
KO
K12890
serine/arginine-rich splicing factor 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
omy05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110533227
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
110533227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110533227
Spliceosome [BR:
omy03041
]
Common components
Common spliceosomal components
SR proteins
110533227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
110533227
NCBI-ProteinID:
XP_021472979
Ensembl:
ENSOMYG00000001874
UniProt:
A0A8L0DPP8
LinkDB
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Position
10:complement(99960..118414)
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AA seq
255 aa
AA seq
DB search
MSGDNMSGGGSVVRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGP
PFAFVEFEDPRDADDAVHGRDGYDYDGYRLRVEFPRSGRGGGRGGMGGGRGGGDGGGPRG
RYGPPSRRSEYRVIVSGLPSSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTY
AVRKLDNTKFRSHEGETAYVRVKVDGPRSPSYGRSRSRSRSNGRSNSRSRSFSPPRRSRA
SPRYSPRHSRSRSRT
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggggataatatgtcgggcggcgggagcgtggttcgtggcccagcgggaaacaac
gactgtcggatctacgtgggtaacctgccgcctgatattcgcactaaagacgtggaggac
gtgttctacaagtacggagcgatccgggatatcgacttgaagaaccggagaggaggaccg
ccgttcgctttcgtggaattcgaggaccccagggatgctgatgatgcggtgcacggtcgt
gatggttatgactacgatggttaccgtctccgggtggagttcccccgtagtggtcgtggc
ggggggagaggggggatgggcggtggaaggggcgggggtgacggtggaggacccagagga
agatatggacctccatcacgacgctctgagtaccgggtcatcgtctccggtctcccctct
agtggtagctggcaggacctaaaggaccacatgcgcgaggcaggtgatgtatgttacgct
gacgtgttccgggacggtaccggcgtggtggagttcgtacgcaaggaggacatgacctac
gctgtccgcaagctggacaacaccaagttccgctcccacgagggagagactgcctacgtg
cgtgtgaaggtggatggacctcgcagccccagttacggacgctcccgctctcgtagccgt
agcaacgggcgtagcaacagccgctcacgcagcttctcaccgccgcgacgcagccgggcc
tctccacgctactcgccacgacactcacgctcccgctcccgcacctag
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