Oncorhynchus mykiss (rainbow trout): 110533376
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Entry
110533376 CDS
T07259
Name
(RefSeq) interferon regulatory factor 1
KO
K09444
interferon regulatory factor 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
110533376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110533376
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
110533376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
110533376
NCBI-ProteinID:
XP_021473187
Ensembl:
ENSOMYG00000046742
UniProt:
A0A8C7WIT4
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All DBs
Position
10:complement(14148151..14152649)
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AA seq
335 aa
AA seq
DB search
MPVSRMRMRPWLEDKIESNSISGLVWVDKDKKIFSIPWKHAARHGWDLNKDACLFKQWAM
HTGKFIQGETTPDPKTWKANFRCAMNSLPDIKEVKDKSINRGSGAVRVYKMLSVSTKPNN
KRSKAKDAKKNDKGLKIKTEEMDNSATHCLEDRNTNTHLQEDRKIQENKVDSSDNLGETI
TAASYLDGSVNDPDVPDFITSVEIGPDSINYYSSFQVSPDHSTDYEDLNEETLIEIAQHW
EQLEQLELPGSVNSKGFLSNEVATVETYNTAESNHSPESQWSDNSGSEIELRLYTELSPG
LPMAEDLVSYTDHWALNNTLNNSTTSYLQQISCPL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgtctaggatgagaatgaggccttggctggaggataagattgagtccaactcc
atcagtggattggtgtgggtggacaaggacaagaagatattctccatcccatggaagcat
gctgcacgtcatggatgggacctgaacaaggatgcctgtctattcaagcaatgggccatg
cacacagggaaattcatacaaggcgagactacaccagaccctaagacatggaaggctaat
ttccgctgtgcaatgaactcccttcctgacatcaaggaggtgaaagacaagagcatcaac
agagggtcaggagcggtgcgcgtttacaaaatgctgagcgtcagcacaaagccaaataac
aagaggtcaaaagcaaaggatgcaaagaaaaatgacaaggggttaaagatcaagacagag
gaaatggacaacagtgcaacccactgcctcgaggatcgcaacaccaacacacacctgcag
gaggacagaaagatacaggagaacaaagtcgacagctcagacaacctaggggagaccatc
acagcagcgtcatatcttgatggctctgtcaatgaccctgatgttccagactttatcacc
tctgtggaaataggaccagacagcatcaactactactcgtctttccaagtgtcaccggat
cactccacagactatgaagatttgaacgaagaaacacttattgagattgcacagcattgg
gagcaattggagcaattggagctgccaggcagtgtaaacagcaaggggttcctgagcaat
gaagtagctacagtagagacatacaacactgcagagtctaaccacagtccagagagccaa
tggagtgataactcagggtcggaaatagagctacggttatacacagaactgagcccaggc
ctaccaatggctgaagatctcgtctcttacaccgaccattgggctctgaacaacacactg
aacaacagcacgaccagttatctccaacagatctcttgcccactttga
DBGET
integrated database retrieval system
