Oncorhynchus mykiss (rainbow trout): 110533439
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Entry
110533439 CDS
T07259
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
110533439 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omy03400
]
110533439 (lig3)
Enzymes [BR:
omy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110533439 (lig3)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
110533439 (lig3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
BRCT_2
FAD_binding_1
Motif
Other DBs
NCBI-GeneID:
110533439
NCBI-ProteinID:
XP_036845722
Ensembl:
ENSOMYG00000032273
LinkDB
All DBs
Position
10:18585266..18611246
Genome browser
AA seq
1024 aa
AA seq
DB search
MQRFCISLALKTVDNIHFGKLCRCQPTWKLFVAYPLSANFQILPHCRGILPYPLDCHQCT
QPPWNRSLSLDSNFKVCWRHYCTNQTDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLTRIG
KIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKL
VGDLMAKANTSPKKKVQAKLNNSGQLSAPPADPSLNAPRKFSGFTATKAGSSSSPGPSPA
KPIQGSPLSAQLCDPKHKDSLLREFRKLCAMVADKNSYNVKTQIIHDFLKKGSGGDKFKG
DVYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETVRMFFEEG
KSFPPAAKSLLTIQEVDASLTRLAQLTKEDEQQKELEDISKKCTGNDLKCIIRLIKHDLK
MNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATNGSGPRKLLTIEASLMTPV
QPMLAEACKSIPYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFVGGNSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFEDAKVCLFVFDCIYFN
GVSLMEKPLYERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
LKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPNSK
KWCTVTKCSGGYDDAMLTRLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKSATNLMQLKELFRISKERCDFEVT
AGPSKGGEDDKGSSGDSGSNSPPSTSQRPVTPRKTSTGNSNTPKAKAVKTEPPSPVPATK
RKMPSEEPSAKKVKTETVHHSNGQSKTKMAPSMLAEPRNDKTSCSPQTLLDIFSGVKLVL
PDSVQDHTKLRRYFVAYDGDLVPEYDAASATHTLTEPEEDSHAQRVTPGWIWECIRKRRV
VPPC
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgcagagattctgtatttcattggcacttaagactgtcgacaatatacattttgggaaa
ctgtgcaggtgtcaacccacctggaaactgtttgtcgcttatcccttatctgcaaacttc
caaattctaccccattgtaggggcatcctcccctatcccttggactgccatcagtgcacc
cagcccccttggaatcgcagtctttcactagattccaatttcaaggtttgctggcgtcac
tattgtactaaccagacagacatggctgaacagagatactgtgtggagtatgccaaacgt
ggcactgcgggatgtaagaagtgtaaggacaaaatcatgaagggcttgacccgcatcggg
aagattgtgcctaacccgttcagtgagtctgccggggagatgaaggagtggtaccatgtg
aagtgtatctttgagaagctggagcgggcccgggccaccactaagaagatcgaggacatc
acagacctggagggctgggaggagctgcaggatgaggacaaggagctcatcaacaaactt
gttggagacttgatggccaaagctaacacgagcccaaagaagaaggtgcaagccaagctg
aacaacagtggtcagctatcagctccgcctgctgacccttctctgaatgcaccacggaag
ttctctggcttcacagctactaaggctgggagctcaagcagcccaggcccatccccagcc
aaacccatccagggcagtcctctttctgcacagctctgtgaccccaaacacaaggatagc
ctgctccgggagttccgcaagctctgtgccatggtggcagacaagaatagctacaatgtc
aagacacagatcattcacgacttcctgaagaaaggctcagggggagataaattcaaggga
gatgtgtacctgacggtgaagttgcttctcccaggggtggtgaagagtgtgtacaacctc
aacgacaaacagatagtcaagctcttcagccgcatcttcaactgcaaccaggaggagatg
gtgcgagatctggaacagggggatgtgtcggagacagtgaggatgttttttgaagaaggc
aagtctttcccaccggccgccaagagtctgctcacgattcaggaagtggatgcgtccctt
acccgtctggcccagttaaccaaggaggatgaacagcagaaagagctagaggacatatcc
aaaaaatgtaccggcaatgacctgaaatgtatcatcagactcattaagcatgatctaaag
atgaactctggagctaagcatgtcttggatgcagtggacccgaatgcctacgacgctttc
aaggcctcccgtaacctaggggacgtgatagagcgcgtgctgaggaaccagcaggacgcc
accaacggctcaggccccaggaagctcctcactattgaagcctccctcatgaccccagtg
cagcctatgctggctgaggcatgcaagtccatcccgtacgccatgaagaagtgccccaac
ggcatgtactctgaaatcaagtatgacggcgagcgtgtccaggtccacaagaatggagac
cacttcagctacttcagccgcagccttaaacctgtgttgccacacaaggtggcccatttt
aaagagttcatccctcaggccttcgttggtggcaacagcatgatcctggatgccgaggtg
ctcctcatcgacaccaataccagcaagccactacccttcgggacactgggggtgcacaag
aaagcagcctttgaagacgccaaagtgtgcttgtttgtgttcgactgcatctatttcaac
ggcgtgagtctgatggagaagcccctgtacgaacgaaggaagttcctccatgacaacatg
gtggaggttcccaacaggatcctgttctccgagatgaagcacgtcactagggcggctgac
ctggcagagatgatcacacgggtcatcagagagggactggaggggttggtcctcaaagac
ctcaagggcacctatgagccagggaagcgccactggctgaaggtaaaaaaggactacctg
aacgagggagcaatggccgacacagcagacctggtggtgctgggagccttctatggcaaa
ggctcaaacggcgggataatgtccagtttcttaatgggctgctatgacccgaactctaag
aagtggtgcaccgtgaccaagtgctccggaggctacgatgacgccatgttgacccgactc
cagaaggagctggacgtgatcaaaatcagcaaggaacccagtaaaatccctggctggttg
aaaatcatcaagaactattaccctgattttattatccgcgatcctgagaaagcgccagtg
tgggagatcacgggggcggagttctccaagtcggagatgcacaccgccgacggcatatcc
atccgcttcccccgcatgacgcgtgtccgtgacgacaaggactggaagagcgccaccaac
ctgatgcagctcaaagagctcttccgcatctccaaggagagatgtgactttgaggtgaca
gcagggccctccaaaggaggtgaggatgacaagggctcttcaggagacagtgggagcaac
tctccaccctccacctcccagagaccagtcactcccagaaagaccagcacaggcaacagc
aatacccccaaagctaaggcagtaaagacagagcctccctcgcctgttccagcaaccaag
aggaaaatgccttcagaagagcccagcgcaaagaaggtaaagactgaaactgtccatcac
agtaatggacaaagcaagactaaaatggccccctccatgttagcagaacccaggaatgac
aagacttcctgctctccccagactctactggacattttcagtggtgtgaagcttgttctg
ccagactctgtgcaggaccacaccaagctgcggcgctactttgtggcctacgacggggac
ctggtgccggagtatgacgccgcttcggccacacacaccctgactgagcccgaggaggac
agccatgcccagagagtcacccccggctggatctgggagtgtatccgcaagagacgggtg
gtacctccatgctga
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