Oncorhynchus mykiss (rainbow trout): 110533450
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Entry
110533450 CDS
T07259
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04270
Vascular smooth muscle contraction
omy04625
C-type lectin receptor signaling pathway
omy04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
110533450 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
110533450 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
110533450 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110533450 (arhgef12b)
Membrane trafficking [BR:
omy04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
110533450 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
110533450
NCBI-ProteinID:
XP_021473341
Ensembl:
ENSOMYG00000033234
LinkDB
All DBs
Position
10:complement(19204353..19319028)
Genome browser
AA seq
1544 aa
AA seq
DB search
MSGIQSTLPERFSKKATRTPSILSKDHPPDKKPKSDKNTVPPAHEFDPTDAPVQLSGCVV
AEGSPSEPCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKV
NGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLAQISLSEGEGGDLSSFLSSPHSPGPT
GGTGERCVTSSTSPQDHITSPLPLWEENNALHSQKVDILQKMLTKEQEDLQAMKEVYSRN
PTAKLLKDIQEAKKHIPLLQSQLSKATGTPQDGSLFHQDGEVEEGGIEAADGEQTPSSQG
ESSSDGPWTNNAVSPSPLPENPCQRETPCHSPKTTPRESLNSCPSPDAEDTADLNCNFQS
SVGSPFSRLNPQIIGAEDDYFDTEQEQINGQCSCFQSIELLKSRPAHLAAFLHHVVSQFD
PAPLLCYLYADLYKQTNSKETRRIFMDFHTFFMDRAANLKVAVPESMTSELERRRPELIP
EELHRPYIQLLQDTLLPDIQRNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVSLERERS
CAEHIISKIEEVLLTSQPTEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPK
IKKSIKPEKEGEEKVKKPRFPSILGPPRRPSRVDSASISKAMELNKHRGPQKQLSQPALS
VFEQPEFSAGGIRARSQFSDPGSDAATHPLAYIAPPPHSAPASQGSDPTGRDSDSGLTPS
SALPRLSTDGLHSGDTLDGMVHLTSTHFDFSPCTLDQLQEEERESDRAQEGGTPKPAQRM
DGLGCGDVPSEDDQGNEIECEQDPPNWQALVSREVLAGLTPQEIKRQEVINELFYTERAH
LRMLKVLDNVFCQKLTRDSILPPGDIKHIFTNLEEIVQLHVWITEQMTVIRKKNETSVID
LIGDDLLAWFSDDEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCR
RLQLKDIIPVEMQRLTKYPLLLESIAKYTEDAEERDKVKRAGECCRTILNYVNQTVKEAE
NKQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTKKKMVHEGPLSWKVNKDKTIELYTLL
LEDILVLLQKQDERLVLKCHSKNLAGTADTKHIFSPIINLNTVLVRSVATDNKSFFVLSM
SDNGAQIYELMAQTVSEQRTWQCLITQSAETMKTKTHIIPLLQTDVERDAVEIISTGVPK
LNKDLERTSMGCTQSPEKDVTSLPGLQPTPTSTNPFDGVKSDDEEEEDSPLPDRREEQEE
EEEVEEVDEEEVEAFLDGELADSLPILQERSRLGITIDDEDPDDAFGMPPSRAEEALRTL
AALRQVLLNHMTSRAEGSDKDKEKGKEKEQRKGRAPGGRLLRTTSLRGPEDNNSISAPSS
VAAPSTGSSENGASEKTEAGREEEAPGSNELPSGDTGFFETSEEYGEPTGTFKAEKRQGI
HPLGSYMVLEGYGASGESSTDNDGQASGGGGGAQWGPDIDLKKLLSSSSQTGGAGPKLRR
QVMTHIRLLQANLQHLKEVETKYNELRQRLTETATDTEENKDNS
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcatacagtcaacactccctgaaaggttttccaaaaaagcaaccaggacccct
agcattctcagcaaggaccaccccccagacaagaaacccaagagtgacaaaaacacagtc
ccacctgcgcatgagtttgaccctacagacgcgcctgtgcagctgtctggctgtgtagta
gccgagggaagcccctccgaaccctgtgggcttgtccagcgttgtgtgatcatccagaaa
gatgagaatggcttcgggttgacagtgagcggagacaaccctgtatttgtgcagttggtc
aaagaggatggcgctgccatgcgagcgggtgtccagacgggtgataggatcatcaaggtt
aacgggaccttagtaacacattcaaaccatgtagaagtcgtcaagctaataaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccggggctggcccagatctcgctgtcg
gagggcgaggggggagacctgtcctctttcctctcttcgccccactctcctggaccaacg
gggggaacaggggagcgctgcgtcacctcctccaccagcccccaggaccacatcacctcc
ccgctgcccctctgggaggagaataacgcacttcacagccagaaggtggacatcttacag
aagatgctgaccaaggagcaggaggatttacaggctatgaaggaggtgtacagcaggaac
cccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctctgctgcag
agccagctcagcaaagccacaggcacacctcaggatggctccctcttccaccaggacggt
gaggtggaggaggggggcattgaggcagccgatggagagcagaccccctcctcgcaggga
gaaagcagcagcgacgggccctggaccaataacgctgtgtctcccagtcccctccctgag
aatccgtgccaaagagagacgccctgccacagcccaaagaccaccccccgagagagcctc
aactcctgcccctcgcctgacgcagaggacacggcggacctgaactgtaacttccagtcc
agtgtgggcagccccttctcccgtctcaacccacagataatcggagcagaggacgactac
tttgacacagagcaggagcagatcaacggtcagtgtagttgtttccagagtatagagctg
ctcaagtctcggcccgctcacttggccgccttcctccatcacgtggtctctcagtttgac
cctgcacctctgctatgctacctttatgctgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttccatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtctatgacctctgaactagagcggcggagacctgagctgatccca
gaggaactgcacagaccttacatacagctgttacaggacacactgctaccagacatccag
aggaacctagaggacttcaggcagaagcgcagcatgggtctgaccctggcagaaggggag
ctggctaagctggacacagagagggtgagagaccgcgtgtcgctggagagagaacgctcc
tgtgccgaacacatcatctccaagatagaggaggttctgctgacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgtcatcctcacctatatgaaacacctgggggtg
aaagtaaaggaaccacgtagcctagagcccaaacgagtccgcatcaacttcctgcccaag
atcaagaagagcatcaaacctgagaaagagggggaggagaaggtgaagaagcctcgcttt
cccagcatccttggccctcctcggcggcccagccgcgtggactcagcttcaatcagtaag
gccatggagttgaacaagcatcggggcccccagaagcagctctcccagcccgccctcagc
gtcttcgagcaaccagaattctcggcaggcggcatccgtgcccgcagccaatttagcgat
ccaggctctgacgcggccacccaccccttggcctacatcgcaccgcccccccacagtgcc
ccagccagccagggctccgacccgacgggacgcgactctgactcgggactcactccctct
tctgccctacccagactgagcaccgacgggctccactcgggcgacaccctggacgggatg
gtccacctaaccagcacccactttgacttcagcccttgcaccctggaccaattacaggag
gaggagcgtgaaagtgacagggctcaagagggaggcacacccaaaccagcccagaggatg
gacgggttaggctgtggggatgtgccgagtgaggacgaccaggggaacgagattgagtgc
gagcaggaccctcccaactggcaggcgctggttagccgagaggtcctggcgggcctgact
ccacaggagatcaaaagacaggaagtcatcaacgagctcttctacacagagcgggcacac
ctgaggatgttgaaggtgctggataacgtgttctgccagaaactaacccgagacagcatc
ctgcctcctggagacattaaacacatcttcactaacctagaggagattgtccagctacac
gtgtggataacggaacagatgacggtcattcggaagaagaacgagacgtcagtgatagac
ctgataggagacgatctactagcttggttcagtgatgatgaggaggagaagatcaagcgg
gcggtgggcaccttctgcagtaaccagccctttgccctggaactcatcaagacccggcag
aagaaagaccagcgcttcacctcctttatgcaggaggctgagagcaaccgtctgtgtcgc
agactgcagctgaaggatatcattccagtggagatgcagaggctgaccaagtatccgcta
ctgctggagagcatagccaagtacacagaggatgcagaggagagggacaaggtgaagagg
gccggggagtgctgcaggacgatcctcaactatgtcaaccagacagtgaaagaggcagag
aacaaacagaggttagaggactaccagagacgcctggacctgtcctctctcaaacagagt
gagaacccaatgatctcagagttcaagagtctagacctgaccaagaagaagatggtgcac
gagggacctctctcctggaaggtcaacaaagacaagaccatcgagctgtacacgctgctc
ctggaggatatcctggtgctgctgcagaagcaggacgagcggttggtcctcaagtgccac
agcaagaacttggcgggcaccgccgacaccaagcacatcttcagccccatcatcaacctc
aacaccgtgctggtgcgctcggtagccaccgacaacaagtccttctttgtgctgtctatg
tccgacaacggagcccagatctacgagctgatggcccagaccgtgtccgagcaaagaacg
tggcagtgtctgataacgcagagcgcagaaaccatgaagacgaaaacacacatcatacct
ttacttcagaccgatgtggagcgagacgcagtagagattatcagcacgggggtgcccaaa
ctgaacaaagaccttgagcgcacctccatgggatgtacccagtccccagaaaaagacgtc
acttccttgccgggtctgcaacccacacccacatcgaccaacccatttgacggtgtcaaa
tcagacgacgaggaagaagaggactcgccactgccagacagaagagaagaacaagaagag
gaggaggaagtggaggaggtagatgaggaggaagttgaagcttttctggatggagagctg
gcagacagtctgcccatcctccaggagaggtcacgcctgggcatcaccatcgacgacgag
gatcccgatgacgccttcggcatgccaccctccagagccgaggaggccctaagaaccttg
gcagccttgaggcaggtccttctcaaccacatgacgagcagagcagagggcagcgacaag
gacaaagagaaggggaaagaaaaagagcagaggaagggccgagcccctggaggccgcctg
ctgaggaccacgtccctgaggggcccagaggacaacaacagtatctcggccccaagcagc
gtagcagcaccctctactggctcctcggagaacggcgcctcggagaagaccgaggcaggg
agggaggaggaggccccggggtccaatgaactaccgtctggggacacaggtttctttgag
acttccgaggaatacggtgagccaactgggacattcaaggcagaaaagcggcaggggatt
caccccttaggcagttacatggtcctggagggctacggggcctcgggggagagcagcacg
gacaatgacggtcaggcgagtggcggggggggtggggcccaatggggcccggacatcgac
ctgaagaagctgctctcctcgtcctcgcagacagggggtgccggccccaaactcagacgc
caggtcatgacccacatccgcctgctccaggccaacctgcagcacctgaaggaagtggag
accaagtataatgaactgcgccaaaggctgactgaaacagctactgacacagaggagaac
aaagataatagttag
DBGET
integrated database retrieval system
