Oncorhynchus mykiss (rainbow trout): 110533644
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Entry
110533644 CDS
T07259
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04142
Lysosome
omy04144
Endocytosis
omy05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110533644
04142 Lysosome
110533644
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
110533644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110533644
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110533644
Membrane trafficking [BR:
omy04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
110533644
Exosome [BR:
omy04147
]
Exosomal proteins
Proteins found in most exosomes
110533644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
110533644
NCBI-ProteinID:
XP_036845954
Ensembl:
ENSOMYG00000016659
LinkDB
All DBs
Position
10:30972693..31020075
Genome browser
AA seq
1694 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQRWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPATG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDLEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEEAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALTNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLGWFLT
EDKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLFKVDAIKEKVDK
LETSESLRKEEEQATETQPIVYGPDNLVNGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGY
PQAPQAQPGFGYGM
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccagaacttgggcatt
aacccagccaacattgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgggagaaggtgggcgagcaggcacaggtggtgatcatcgacatggccgaccccaacact
cccatccgcagaccaatctctgctgacagtgccatcatgaaccctgcctccaaagtcatt
gcacttaaagacgccgccaaaacccttcagatctttaacattgagatgaagagcaagatg
aaggcccacaccatgactgatgacgtcaccttctggaagtggatctccctgaacacagtg
gcacttgtgactgacaatgccgtctaccattggagcatggagggggactcccagccaatc
aaagtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgac
gccaagcagagatggctgctgctcattggcatctccgcacagcaaaaccgtgtggtgggt
gccatgcagctgtactctgtggacaggaaggtgtcacagcccatcgagggccatgccgca
ggcttcgcacagtttaagatggagggcaacacagaggagtccacactgttctgctttgct
gtgagaggacaggctgggggaaagttgcacatcattgaggtgggcaccccagccacaggg
aaccagccttttccaaagaaagcagtggatgtgttcttccctccagaggctcagaatgac
ttcccagtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgcatctacatgaacaggatcagc
ggagagaccatctttgttacggcccctcacgaagccactgccggcatcattggggtcaac
aggaaaggacaggttctgtcagtgtgtgtggaggaggagaacatcatcccttacatcacc
aatgtgctgcagaacccagaccttgccctgcgcatggccgtccgtaacaacctggccggg
gccgaggagctgttcgcgcgcaagttcaacaacctgtttgccggcggaaactactctgaa
gctgccaaggtggccgccaacgcaccaaagggcatcctgcgtactccagacaccatccgt
aagttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaataagtttgagtctctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgctggagaagtggctcaaagaggacaagctggagtgt
tctgaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctac
ctgagggccaatgtacccaacaaggtcatccagtgcttcgctgagaccggacagttcccc
aagatagtcctgtacgccaagaaggtgggctacactccagactggatcttcctgctgagg
aacgtgatgaggatcagtccagaacagggcctgcagttctcccagatgctggtccaggac
gaggagcctctggctgacatcacacagatcgtggatgtctttatggagtataacctgatc
cagcagtgtacctccttcctattggacgccctgaaaaacaacaggccttctgaggggccg
ctgcagacacgccttctggagatgaacctcatgcacgccccacaggttgctgatgccatc
ctgggcaaccagatgttcaccaactacgaccgtgcccacatagcccagctgtgtgagaag
gctggtctgctgcagagagctttagagcactacactgacttgtacgacatcaaacgggcc
gtggtgcacacacaccttctcaacccagagtggctggtgaacttctttggctccctctca
gtggaggactctctggagtgcctgagggccatgttgtctgccaacatccgtcagaacctg
cagatctgtgtccaggtggcttccaagtaccacgagcagctctccaccaactctctaacg
gagctcttcgagtccttcaagagttttgagggtctgttctacttcctgggttccattgtt
aacttcagccaggacctagaggtccacttcaagtacatccaggcagcctgcaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaggccaagctgaccgaccagctcccactcatcattgtgtgtgac
cgcttcgactttgtccatgacctggtcctctacctgtaccgtaacaacctgcagaaatac
attgagatctatgtgcagaaagtgaaccccagccgtctaccagtggtgattggagggctt
ctggacgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacag
ttctccactgatgaactggtggctgaggtggagaagaggaaccgactgaagcttctcctc
ccctggctggaggcccggatccatgagggctgtgaggagcctgctacccacaatgccctg
gccaagatctacatcgacagcaacaacaaccccgagcgcttcctgcgtgagaacccctac
tacgacagccgcgtggtgggcaagtactgcgagaagagggacccccacctggcttgcgtt
gcctacgagagaggacagtgtgaccaggaactcatcaacgtgtgcaatgagaactccctg
ttcaagagtctgtctcgctacctggtccgtcgcagagacccggacctgtgggccagcgtg
ctgctggagagcaaccccttcagaagaccactcattgaccaggtggtgcagacagccctg
tctgagacccaggacccagaggaggtgtcagtcacagtaaaggccttcatgactgcagac
ttgcccaacgaactcattgagctgttggagaagatcgtactggataactctgtcttcagt
gaacacagaaacctgcagaacctgctgatcctgacggccatcaaggcagaccggacccgt
gtgatggagtacatcaaccgcctggacaactatgatgccccagacattgccaacattgcc
atcagcaacgagctcttcgaggaggcctttgctatcttcaggaagtttgacgtcaacacc
tctgccgtgcaggttctcattgagcacattgggaatctggatcgagcctatgagtttgcc
gagcgctgcaacgagccagctgtgtggagccagctggccaaggctcagctgcagaaggga
ctggtcaaggaggctatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtggtacaggccgccgaccagagtggtaactgggaggacctggtgaagttccttcagatg
gcccgtaagaaggcccgggagtcctacgtggagacagagctcatcttcgccctggccaag
accaaccgcctggctgagctggaggagttcatcaatggacccaacaacgcccacatccaa
caggtcggcgaccgctgttacgacgagaaaatgtacgatgcggccaagttactgtacaac
aacgtgtccaactttggccgtctggcgtccaccctggtgcacctcggggagtaccaggcg
gctgtggacggggcccgcaaggccaacagcactaggacctggaaggaggtgtgctttgcc
tgcgtggatggaaaggagttccggctggcacagatgtgtggcctccacatcgtggtgcat
gctgacgaactggaggagcttatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctggggctggaacgggctcacatgggtatgttcacagag
ctggccatcctctactccaaattcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggttctgcgggcggcggaggaggcccacctgtgggcg
gagctggtgttcctgtacgataagtacgaggagtttgacaatgccatcatcaccatgatg
aaccaccccaccgacgcctggaaggagggccagttcaaagacatcatcaccaaggtggcc
aacgtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactg
aatgacctgctcatagtgctgtcccccagactggaccactcccgtgctgtcaacttcttc
agcaaggtgaaacagctgcccctggtcaagccctacctgcgctctgtacagaaccacaac
aacaagtctgtcaatgaagcacttaccaacctcttcatcacagaggaggactatcaggct
ctgaggacctctatagatgcctatgacaactttgacaacatctcgcttgcccagcgcttg
gagaaacacgagctgattgagttcaggaggatcgctgcctacctcttcaagggaaacaac
cgctggaaacagagtgtggagctctgcaagaaggacaaactctacaaggatgccatgcag
tatgcgtcagagtccaaggatacagagttggctgaggagctactgggctggttcctgacc
gaggacaaaaaggagtgctttgccgcctgcctcttcacctgttatgacctgctgaggcca
gacgtggtgctggagacggcctggaagcacaacatcatggacttctccatgccctacttc
atccaggtcatgagagagtatctcttcaaggttgatgcaattaaggaaaaggtggacaag
ctggagacctcggagtccctaaggaaagaggaggagcaggcgacagagacacaacccatc
gtctatggtcctgataacttagtaaatggcacaccccagcttatgctgactgctggccca
agcgtgcccgtgcccccccagcaggcctatggctacggttaccaggctcctgcaggctac
ccccaggcacctcaggcccaaccaggctttggctacggcatgtaa
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integrated database retrieval system
