Oncorhynchus mykiss (rainbow trout): 110533689
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Entry
110533689 CDS
T07259
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110533689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110533689
03036 Chromosome and associated proteins [BR:
omy03036
]
110533689
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110533689
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
110533689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
110533689
NCBI-ProteinID:
XP_021473813
Ensembl:
ENSOMYG00000027349
UniProt:
A0A8C7S0Q2
LinkDB
All DBs
Position
10:34089737..34120835
Genome browser
AA seq
1810 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAPSGTSTSLFGSTSTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTASSGGLFGATNSNPFGGASTSLFGASGFTQQAAQPGT
TVKFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMA
APTGGLFGAAAAATPSTGATGLFGSSATNTGFSFGQAKTSFGTSAGGFGAATGSLFGQQQ
PQQVQQAVSLFKPFGQATTTPNTGFSFGSTMGQPQQTSTMGGLFGATAVSQAGGLFGNTA
QTAPATGFGTGTGLFGQTNTAFGNVGTQQGLFGNKTAGFGVTTTSTPSFGTGTGLFGNKA
ALSLGTATNTSNFGFGPTAAGGSLFGNKTAAGGLGTGLGASFGAVGSGQMSLFGNNKTLG
STLGTMGGFGVQGFSTGNSTLGFGAPQQPVAVTDPNAVAAQQAVLQQQINALAYSPFGDS
PLFRNPLSDPKKKEERLKPTNPVAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLF
DGLDDEEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDSDDLSSPPEYPLNGLGAS
VDEDDDVREVVEGGAENNLEIKFYAKPNLQDTISELNAHRMGAGGRNGLEVSSEDISLGD
DSIQEERVEGPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTVGRKGYGSVFF
HGEVNVTGLNLDEIVHFRRKEVIVYLDDKNKPAEGEGLNRRAEVTLDGVWPNDKTTCTQI
KSPERLSEMNYEGRLENASRKQGARFLEYRSETGSWVFEVAHFSKYGLQDSDEDEEVPLK
LDPKKLKTATRLPPGLLQLPPSQQQVAPQAQSTAVLELLNRMSEVDSDMADITQDAPGES
ILEEWESGMWEKGSRLGNVTPSEHDSVSASSQIASSLGINPHTLQIMKASLFAEADDGDM
FQEQGGMTSSLDVASPRINLPGTQGRPSIGGLLQTRFGGAGLFQLPDVPFGGGLPGRLSM
SRVSLAVPEPSRVSPWPSFLLLAPPAEATVRTVGARRLGGPVDPENSVTLGKGRLLMDAA
LFTGRSFRVGWGPGWTLVHCGDGLSVAGDKEQDHGDTGAAGFGFLPKPAKSRLLSDSPFK
VVIEQVVGLELRNSEESQAVYQRPLEISLKHSSISTEGACPFIQPQSGVAALHEYAEWIT
DLNQEAGAGDAVLGHWAQVWTLCEALWGRRCLTGPGTSGYLQQMERRRNFSAWLSHSATQ
RIEQEVGLNQGGGNVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQAVGSQYGRELLA
LQLGDWNRMQTDSFLPEERLRIFALLAGKPVWQSTDCVVNVCSELDWKRCMAVHLWYMLP
PTASIAEALVKYEAAFQGSAEGQKYACAPLPPYLDQSDQPDMEEEESKRPLYDICFHLLK
LYSDRHYSLQQLLDPLAVTWDRLDYRLSWHLWSVLQALHYTHLSPARQGLIHTSYAAQLE
SAGLWDMAIYVLLHIPDNALRERAVREMLQLHCPLLETEESAKKEHFLTERLLVPEQWLH
QAKATRARRDTDSHGEALHLYRAGHWNLCHSLVIQHLASDCIINDNHEYLLKFLEGLAVP
ERSAVIQDWDTAGRVYLDYIRVVQTLHAIQQMDITGYELECLHTEVRSLCSRIELLPCST
AKDRLSQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLASNIGRLPMPEDYALEELRSLT
QSYLRQLIVS
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtgctccctttgggggagggactggaggatttgggacgtca
tccacatttgggcaacaaaacactagctttggggcggcaacaggtggcttcggagcctca
gcgtttggggcaaccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcagcaaatccacactggtgcaggtagaggaggtggcctatttggt
tccagtaccttcagccagcctgtgacatcatctaccagtagcggctttggctttggtgcg
cccagcggcacctccaccagcctgttcggcagcaccagcacgggcggcggcggaggactc
ttctcccagcagagcaatgccttcggcgccgccaagccagcctcttttggcacgttcggt
acgagcacggccagcagtggggggctgtttggggcaaccaactccaaccctttcggaggg
gcgtctacctccctgttcggagcatcagggtttacccagcaggctgcccagccaggcacc
actgtcaagttcaaccctccaacaggaagtgacaccatggtgaaagggggtgtgacgaca
agcatcaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggtttgaggactaccaggcagggaggaagggacccactaaccctatggct
gcaccaacagggggtctctttggggctgcagccgcagccacccccagtacgggggctaca
gggctgtttggctcctcagccactaacacaggcttctccttcggccaggccaaaacctca
ttcggaactagtgcgggtgggtttggtgcagccacaggcagtctgtttgggcagcagcag
ccccagcaggtccagcaggcagtcagcctgttcaagcccttcggccaggctacaaccacc
cccaacacaggcttctccttcggcagcaccatgggccagccccaacaaaccagcaccatg
gggggtctgtttggggccacggcagtgtcccaggcaggggggttgtttggaaacacagct
cagaccgcaccagctacgggctttgggacaggcaccggactctttggacaaaccaacacc
gctttcggcaacgtcggcacacagcagggcttgtttggtaataaaacggcagggtttggt
gttaccaccaccagcaccccgtcgtttggcacgggcaccggcctcttcggcaacaaagct
gccctctctctcggaacagctaccaacacatccaactttggttttggacccactgctgct
ggcggaagcctttttgggaacaagactgcagcaggaggactagggactgggctgggagcc
agctttggagcagtaggttctggccagatgtctctgtttgggaataacaagacgttgggt
tccactctgggaacaatgggaggttttggagtgcagggattcagcacaggaaacagcact
ctgggcttcggagcgccacaacagcccgttgcggtgacggaccctaacgcggtggcggcc
cagcaggcagtgctgcagcagcagatcaatgctctggcctactcccccttcggagactcc
cccctcttcagaaaccccctctctgatcccaagaagaaggaggagcgtctgaagcccacc
aatccagtggcccagaaggcattgaccacaccaactcactacaaactgacaccgcgacct
gcgacacgtgtgcggcccaaagctctgacatcatcgggctcctccaagtcccagctgttt
gatgggttggatgacgaagagccttctctcaccaacggtgccttcatgcccaggaagagc
atcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagcagcccaatcaac
agagactccgacgacctgtcttctccaccagagtaccccctcaacggactcggtgccagt
gtggacgaggatgatgatgtgagggaggtggtggagggaggagccgagaacaacctggag
atcaagttctacgccaagcccaacctacaggacaccatctcagagctcaatgcccatagg
atgggggctgggggcaggaacgggcttgaggtgagcagcgaggacatatcgctgggagat
gactccatacaggaggagcgagtggagggccccccccatcctgcaggtatcgttctgggc
cgtgtgggctactacaccatccctgccatggacgagctggccaaaatggtggacgaaaac
ggggtgtgtgtggtggaaaacttcaccgtgggcagaaaaggttacggctccgtgttcttc
catggtgaggtgaacgtgactgggctgaacctggatgagattgtccacttcagacgtaaa
gaggttatcgtctacctcgacgacaagaacaagcctgctgagggggaggggctcaacagg
cgagcagaggtgactctggatggggtgtggcctaatgataagaccacctgtactcaaata
aagagccctgagcgtctgtctgagatgaactacgagggccgcctggagaatgcctcacgc
aaacagggcgcccgcttcctcgagtaccgctccgagacggggtcctgggtgtttgaggtg
gcccatttctctaagtacggcctgcaggactctgacgaggatgaggaagtccctctcaaa
ttggaccccaagaagctgaagacggcaacaagacttccaccagggctgctgcagctgcct
ccctcccagcagcaggtggcgccacaggctcagtcgacagcagtgctggagctgctgaat
cgcatgtcggaggtggacagtgatatggccgacattacccaggatgccccaggggagagc
atattggaggaatgggagagtggcatgtgggagaagggaagtcggctggggaatgtgacc
ccttcggaacacgactctgtctcagcgtccagtcagatcgcctcctcgctggggatcaac
cctcacacactacagattatgaaggcatccctgtttgctgaggccgatgatggtgacatg
ttccaggagcagggagggatgacaagttctctagatgtggcctctcctcgcatcaacctg
cctggcacgcagggtaggccctccataggtggtctcctgcagactcgtttcggcggtgct
ggtctctttcagctccctgacgtgcccttcggtgggggccttcccggcaggctgtccatg
tctcgggtgtcgctggcggtgcctgagccatcgcgggtctccccctggccctcttttctt
ttgctagccccaccggccgaggccactgtacggacagtaggggctcggcgcctgggggga
cctgtggacccagagaactcagtcacactggggaagggccgtcttctgatggatgcggct
ttgttcacgggccggtcatttcgggtgggctggggtcctggctggactctggtccattgt
ggagatgggctaagtgtggccggggacaaggagcaggaccacggagacacaggagctgca
ggctttggattcctgcccaaacctgccaagagtagactactgtcagacagtccattcaag
gtggtgattgagcaggtggttggtctggagctgcggaacagtgaggagagccaagcggtg
taccagcggcccctggagatcagcctgaagcacagcagcatcagtacagagggggcctgc
cccttcatccagccccagagcggtgtggccgccctgcatgagtacgcagagtggattact
gacctcaaccaggaggctggtgctggagatgcagtcctgggtcactgggctcaggtgtgg
actctgtgtgaggccctgtggggccgacggtgtttgacagggcctggtaccagtggctac
ctgcagcagatggagaggagaaggaacttctcagcctggctgtcccacagtgccacccag
aggatcgagcaggaagtgggcctgaaccaggggggaggaaacgtggaggccatctttagc
tacctgactggacaccggatcagtgacgcctgcaggctggctcagaagagtggggaccac
cgtctctccctgctgctgtcccaggcggtgggctctcagtacggccgggagctgctggca
ctgcagcttggagactggaacaggatgcagacagactctttcctgccggaggagaggcta
cggatctttgcccttctcgctgggaaacctgtgtggcagtctacagactgtgtggtgaat
gtgtgttcagaactggactggaagcgttgtatggcggtccacctgtggtacatgctgcct
cccaccgcctccattgctgaagccctggtgaagtacgaggctgccttccagggctctgct
gagggtcagaagtatgcctgcgccccccttcccccctacctcgaccaatcagaccagccg
gacatggaggaggaagagtctaaacggccgctttacgatatctgcttccacctgctcaaa
ctctacagcgacaggcactacagcctgcagcagttgttggaccccctggcggtgacgtgg
gatcgtcttgactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactac
acacacctcagcccggcccgacagggcctcatacacaccagctatgctgcccaactggag
agtgctggcctctgggacatggccatctacgtactgctgcacatacctgacaacgcgctg
cgtgagcgggcggtgagggagatgctgcagctgcactgccccctgctggagacggaggag
tctgccaagaaagagcactttctcacagagagactactggtcccagaacagtggctccac
caggccaaagctaccagagccagaagagacacagacagccacggagaggcccttcacctg
tacagagcaggacactggaacctctgccacagtctggtcatacagcaccttgcctcagat
tgcatcattaatgataatcatgagtacctcttgaagttcctggaggggcttgcagttcct
gagcgcagtgctgtgatccaggactgggacacggcaggcagagtctacctggactacatc
agagtcgtacagaccctacacgccatacaacagatggacattactggttatgagctggag
tgtctacacactgaggtgaggtcactctgcagcaggatagagctcctcccttgctccacc
gccaaggaccgcctctcccaatcagagatggccaagcgtgtggctaacatcctgcgtgtg
gtgttgagtctgcagcagggtggtgagggtggcgagatccccttgtcccagcttgcgtcc
aacatcggccgtctgcccatgcccgaggactatgctctcgaggagctccgcagtctcacc
caatcatatctgagacagctcattgtcagctaa
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