Oncorhynchus mykiss (rainbow trout): 110533809
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Entry
110533809 CDS
T07259
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
110533809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110533809
03036 Chromosome and associated proteins [BR:
omy03036
]
110533809
Transcription factors [BR:
omy03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
110533809
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110533809
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
C5HCH
Motif
Other DBs
NCBI-GeneID:
110533809
NCBI-ProteinID:
XP_021474011
LinkDB
All DBs
Position
10:complement(37202094..37248453)
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AA seq
1966 aa
AA seq
DB search
MSAEMLSIPLGTSKLNVLVTKLHGFLAHAPEEDDTLVTESPEGIMTKDCVEPHSTDRTSL
ETSTDALKQSRCGSRRKPSVVIKHSGLDESGASNESDDDCLIVNSNGYPDVTRLPKGTAL
VRPEPVENVRDDFRGTELHCGKSGHLRRVFPRRRGGGEHLEIVSCTACGQQVNHFQRDSF
NQHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPNAFCKKCILR
NLGRKELSGILDEESKWYCYVCSPAPLLDLVVACDNVLDNLGSLWQDHRKRGRGDGKSGH
CDSHPRHSQNIPTGHWNHSGMDGHVVFNYNTLQIPEEMAKKAKNLVDSTNTVNTTFVKFI
KGGMDFKRQYLKTFQSVLKGLKKSHTALEEALWEEFKEIGLPKDGGNPTFGTDAPQQAQE
GCVEMDIVDKNCLHYLKKIASEHLEENDSDSKGFTDDERPSSSSEMKGVLGTERIPRRGR
GRPRKNSKPGEDPSNMTKQLVVQLTPVPVEKQPPSGPPELEAEEKKELEEEIKEKVDERK
GDCESIEPATEGEYESAEEGNESLVLELEDEPENRRSPRVKTTPLRRPGEGKTKSTPSGA
DSEGDSDPDTSPNVEVPQGADEGGLERGIEDSDSDEVPAVLQRAAMARSSDEAGSDDGDH
RSVTKKCLFGLKKNTALSPERVVRKRKVQDRSSDSDSSSDNPDLQKEIKTMSRPRGRPRK
VKREDEPTPSKNSPQHRPPGRPRKVKKENESAFSKEGNTQVTKPKSTPRSQQKTKQSPSS
SSQEEGDQDSESSDDSGDQKIKPITEEVALLGSAAFHQSSGDEEQTRSGPSWDAEDDDDP
ENRIAKKMLLAQIKANYSSGEDFSSDEESSQDDESDREEKAQEEGKDQSSDENGETSSLT
SDSESSKTRHRHCLLRHKLSLDDGNPSDQKTAEENGNEQKVKKSRRTEGETLESQSSDDS
QSEQEESGMSEELSQSENEGNEQKPKSSSTSRVERESVRSYLQKKQQPSYIVLSDSSVDK
SEDDEKDGDNKGTPKGRKKIRRIIIDEHLRSETQRALKEEEDRCRRLAGREQREDFREVI
VIDDEVSQVACPITTKLVLDQDEGTREPLIQVHRNLVTRLKPHQVDGVQFIWDCCCESVK
KANSTPGSGCLLAHCMGLGKTLQVVTFLHTMLQSRCLNFRTALVVCPLNTILNWVNEFDK
WQVNMGADKVKVTELATLKRPQERYIALQKWQKDGGVMIMGYEMYRNLTLGLKVTHRQFK
KTFNSTLVDPGPDFVICDEGHILKNEASNISKAMSAIKTKRRVVLTGTPLQNNLNEYHCM
VNFIKENLLGSIKEFRNRFINPIQNGQCADSTPRDVRVMKNRAHVLHAMLAGCVQRRDYS
ALTKFLPPKHEYVMAVRVTPLQYRLYRYYLDNFTGAGSVVEGARGKTGTSLFKDFQILSR
IWTHPWCLQLNFISKENKGHFDGKHHGKAESKEKENKGKLRNADDKSNDVEVIMVWNSSS
KGVNVEGDQRAGPLVPVVDAVRASTSFRPDSPAADWYKSMLSDSDATILGHSGKMVLLFE
ILRMAEELDDKLLVFSQSLISLDMIEDFLDLANKAKDNGQSSLYKGDGSWIRNIDYYRID
GSTSATSRKKWAEEFNDATNERGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYDIQS
IFRVYRFGQLKAVFVYRFLAQGTMEEKIYDRQVAKQSLSFRVVDQQQIQRHFTLFELTEL
YMFEPDLLDDPNSEKKSKRITPLLPKDIVLAELLQICKEQIVRYHEHESLLDHKEEEELS
EADRKAAWAEYEAEGAFFLNKAALSSTNVPSPSTSRMANSLSSLYKKTNEQLKNMINASR
DKVSEAIKSLHSLKNLSMDDYVLRLWHDNPSLDEKQVKVLAQTWKTSNDKERERRRALYH
DLLSKQQSLTMCIQTILTSRKTEVTETATVTNQTPALTDSVKKPML
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagagatgctcagcattcctcttggcacgagcaagctcaatgtgttggtgacc
aaactgcatgggttcttggctcatgctccagaggaagatgacacactggtgactgaaagt
cctgagggtataatgaccaaggactgtgtggagccacactcaacagaccgaacctccctt
gagacctcaacagacgccttgaagcagtccagatgtggttccaggagaaaaccttccgtt
gtgattaaacacagtggactggatgaatctggtgcttcaaatgaaagtgatgatgactgc
ttgatcgtcaattcaaacggttatcctgatgtaacaagattgcctaaaggtactgcactg
gtgaggcctgagccggtggaaaatgtcagagatgacttccgaggtacagaattacattgt
ggaaaatctggtcatctgaggagagtttttcccaggagacgtggaggaggtgaacacttg
gagattgttagctgtacagcctgtggccagcaagttaaccacttccagagggactccttc
aatcagcatccggtactcaaagtacttatttgcaagtcttgtttcaagtattactcaagt
gatgacatcagcaaggattgtgatggcatggatgaacagtgcagatggtgtgcagagggg
ggaaacctgatctgctgtgacttttgccccaacgccttctgtaagaaatgcattttgcgt
aatctggggcgaaaggagctgtctggcatcctagatgaggagagtaagtggtactgctac
gtatgcagcccagcgcctcttctagacctggtcgtcgcctgtgacaacgttcttgacaac
ctggggagtttgtggcaagaccaccgcaagaggggcagaggtgatggcaaatctggacat
tgtgactcccatcccaggcattctcaaaacattcccacgggtcattggaaccatagtggt
atggatggtcatgtggtgttcaactacaacacccttcaaattccagaggagatggccaaa
aaggcaaaaaaccttgtggactctacaaacactgtaaacacaacttttgtgaaattcatt
aaaggtggaatggattttaagcgacaatacttgaagactttccagtcagtactaaagggt
ctaaagaagtcccacacagctctggaggaagccctttgggaggagttcaaagagattggt
ctgccaaaagatgggggaaaccccacttttggtactgatgcacctcaacaagcacaagag
ggttgtgtggaaatggacattgttgataaaaattgcctgcattacttaaagaaaattgca
tctgaacatttggaagagaatgattcagactctaaaggctttacggatgatgaaaggcct
tcgtcctcaagtgaaatgaaaggtgtccttggcacagagagaataccccgtcgaggtaga
ggcaggccacggaaaaactccaaacccggagaagatccttccaacatgacaaaacaactg
gtggtgcaacttacacctgtccctgttgaaaaacagccaccctctggccccccagagttg
gaggcggaggaaaaaaaggagttggaggaagaaataaaagaaaaagtggatgaacgtaag
ggggactgtgaatctattgaacctgcaacagaaggggagtatgaatccgctgaggaggga
aacgaatctcttgtgctggaactggaagatgaaccagagaatagacgctcacctcgggta
aagaccacgcccttacgcaggccaggtgagggcaagaccaagtctaccccctcaggcgct
gacagtgagggtgactccgaccctgataccagccccaatgttgaagtgcctcaaggagct
gatgagggagggcttgagagaggaattgaagactcggactccgatgaggtccctgctgtc
cttcagcgggcagccatggctcgcagttcagacgaagccgggagtgacgatggagaccat
cggagcgtgaccaagaaatgcctcttcggcctgaagaagaacactgccctctctccagaa
agagtggtccgcaaacgcaaggtgcaagaccgctcctctgactccgactcctccagtgac
aatccagacctgcagaaggagatcaagactatgagcaggcccagggggaggcctcggaag
gttaagagagaggatgaacctacccccagcaagaatagtccacaacataggcccccgggc
agacctcggaaggtcaagaaagagaatgaatctgcattcagcaaggagggtaatacccag
gtaaccaagcctaaaagcacacctcggtcccagcagaaaacaaagcagtcgccatcctct
tccagtcaagaagagggagaccaggattctgagtctagcgacgacagtggtgaccagaag
attaagcctatcactgaggaggtggccttactggggtcagcagctttccaccagtcatct
ggcgatgaagagcagacccggtctgggccttcttgggatgcagaagatgatgacgatcca
gaaaatagaatcgctaagaaaatgctcttggcccaaatcaaagccaactactcatcgggg
gaggatttctcttcagacgaggagtcatcacaggatgatgaatctgacagggaagagaag
gcgcaggaagaggggaaagatcaaagctcagatgagaatggggagacctccagtttgacc
tctgactctgagtccagtaaaactcgtcacagacactgtctgctacgccacaagctcagc
cttgacgatggaaatccaagtgatcagaaaacagctgaagaaaatgggaacgagcagaaa
gtcaagaagtctagaagaaccgaaggtgagacattggagagccagagtagtgatgatagc
caatccgagcaggaagagtctggtatgagtgaagagctgagccaatctgagaacgagggc
aatgaacagaagcccaaaagctcatctacctctagagtcgagagggaatcagtccgtagt
tatctacagaagaagcagcagccctcatatattgtgctgtctgactccagcgtcgataag
agtgaagatgacgagaaggacggagacaacaaaggtacacctaagggccgcaagaagatc
cgcagaatcatcatagatgagcacctccgctcagagacccagagagccctgaaggaggag
gaggatagatgcagacgcctggcaggcagagagcagagggaggacttcagagaggtgatt
gttattgacgatgaggtgtctcaagtggcctgtccaatcaccactaagctggtcttggat
caggatgaggggaccagggagccactcattcaggtgcacaggaacctggtgaccaggctc
aagcctcaccaggtggatggtgtgcagtttatctgggactgttgttgtgagtcagtgaag
aaggccaattcaacccctggatcaggttgcttactggcccactgcatgggcctagggaag
acactgcaggtggtgacattcctccacacaatgctgcagtcaaggtgcctgaacttcagg
actgccttggtggtgtgtccactcaacactatccttaactgggtcaacgagtttgacaag
tggcaagttaacatgggagctgacaaagtcaaggtgacagagttggcaacactgaagcga
cctcaggagcgttatattgccctgcagaaatggcagaaggatggtggtgttatgatcatg
ggctatgagatgtaccgcaacctcacactaggcctcaaagtcacccacagacaattcaaa
aagacctttaacagcacactggtcgatccaggtccagactttgtgatctgcgatgagggg
cacatccttaagaacgaggcgtccaacatctccaaagctatgagtgccattaagaccaaa
cggagagtggtgctgacaggcaccccactgcagaacaacctcaatgagtaccactgcatg
gtgaacttcatcaaggagaaccttctaggctcaatcaaggagttccggaatcggtttatc
aaccccattcagaatggccagtgtgcagactccacccccagagatgtccgcgtcatgaag
aatcgcgcccatgtccttcatgcaatgttggcaggatgtgtacagaggagagactactca
gccttgaccaagttcctgccccctaaacatgagtatgttatggcagtgagggtgaccccc
ctccagtacagactgtatcgctactacttggacaacttcactggagcaggatctgtagtt
gaaggagccaggggcaagactggaaccagcctctttaaggacttccagatactcagccga
atctggacgcatccctggtgtctgcagctcaactttatcagtaaagaaaataagggccat
tttgatggaaagcaccatgggaaagctgagagtaaagagaaggagaacaagggaaaattg
cgtaatgctgatgataaaagcaatgacgtggaagtgatcatggtgtggaacagctcatca
aagggtgtcaatgtggaaggagaccagcgagcagggccactggttccagtggtagatgcg
gtgagagcgtccaccagtttcaggcctgacagtccggctgcagactggtacaagtcaatg
ctgagtgattctgacgccaccatcctgggacactcagggaagatggtgctgctgtttgag
attctccgaatggcagaggaactggacgacaaactgttggtgtttagtcaatccttgatc
tcattagacatgattgaagatttcttggacctcgctaacaaagccaaagacaacggacaa
tcatccctatacaaaggtgatggcagctggatcagaaacattgactattaccgtattgat
gggtccaccagtgccacatccaggaagaaatgggctgaagagttcaatgatgccaccaat
gagcgaggtcgtctgtttctcatctcaacaagagctgggtcccttgggatcaacctggta
gcagctaacagggtcatcatttttgacgcttcgtggaacccctcctatgacatccagagc
atcttcagggtgtaccgttttggccagctgaaggcagtgtttgtctaccgcttcttggca
cagggcaccatggaggagaagatctatgaccggcaggtggccaagcaatctctatcgttc
cgggtggtggaccagcagcagatacagagacacttcactctgtttgaactgacagagctt
tacatgtttgagccagacctgctggatgaccccaactctgagaagaagagcaagcggatc
acacccctgctgcccaaggacatcgtcctggcagagctgctgcagatctgtaaggagcag
attgtccgataccatgaacacgagtccctgctggaccacaaagaggaggaggagctcagt
gaggccgaccgcaaagctgcctgggctgagtacgaggcagagggtgcattcttcttgaat
aaggcagcactcagcagcaccaacgttcccagcccctccacctctcgtatggccaacagt
ctgtcatccctgtacaagaagactaatgagcagctgaagaacatgattaatgccagccgt
gacaaggtcagcgaggccatcaagtccctgcattccttaaaaaacctctccatggatgac
tatgtgttgcgcttgtggcacgataacccaagtctagatgagaagcaggtgaaagtcctg
gcccagacctggaaaaccagcaatgacaaggagcgggagcgaaggcgagccttatatcat
gaccttctctcaaaacaacaatcacttacaatgtgcatccagaccattttgaccagtaga
aaaactgaagtgacagagactgccacggtcaccaatcagacaccagccttgacagactcc
gttaagaaacccatgctgtga
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