Oncorhynchus mykiss (rainbow trout): 110534212
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Entry
110534212 CDS
T07259
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110534212
03036 Chromosome and associated proteins [BR:
omy03036
]
110534212
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110534212
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110534212
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_N
MJ0788
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
110534212
NCBI-ProteinID:
XP_021474605
Ensembl:
ENSOMYG00000021808
LinkDB
All DBs
Position
10:50260695..50310535
Genome browser
AA seq
1751 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQAFMDDEEEEEELNTEDQDEHGNLRGLIDDDVDE
DEEAEEKKSGGAGSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDR
VKLMDDDEDDEKDQIADEIFHGGDGEGELEEGETVDPPLHRHGERHDEEEEEEGEEESDI
DDFIVDDDGQPITKKRGKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYDQGEEEEEDQD
EESWDRPKKQTKRRVGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPVKPA
EDNELEQEAEWIYRNAFSTPTISMQESTDYLDRGTTTNLSRKGPSTIAKIKEALNFMRNQ
HFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQSHQYEQIS
ADPDKPLADGIRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNTAKAASKKK
TLRKIKEVNEDGEEEEVEVEVEEEQKGPDLKLASRRDMYSICQSAGLDGLAKKFGLTPEQ
FGENLRDSYQRHETEQFPAEPVELAKDYVCSQFNSPEAVLEGTRYMVAMQISREPLVRHV
LRQTFQERAKININPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGEQFLKMCQAEEEGLL
TIDICIDLLGVKGFAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYPQM
AKELKNKLIAEAKDNIIKSCCRRLYNWLKVAPYRPDQQQAEEEDDDLMDESQGKGIRVLG
VAFADSRDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDERDKKLQDIENLKKFLISK
KPHVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELAMLYMNSTKSQTDF
RDYPPLLRQAVSVARKIQDPMVEYSQVCSTDEDILCLKLHPLQEHVVKEDLLNALYCEFI
NRVNEVGVDVNRAISHPYTQSLVQFVCGLGQRKGSHLLKILKQNNTRLENRTQLVTMCHM
GPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDA
NPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPYRA
PNTEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCPFCQQ
DNFPELSEVWNHFDSGSCPGQAIGVRSRMDNGVQGFIPTKFLSDKVVKHPEERVKVGMTV
HCRIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDTYYDFDAETEDTKAEEELKKKQQRT
TYIKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHVDV
REEGKENAFSLGHTLWIYTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGDKKKM
EELLIRCKKEKPAFIPYFVSACKDLPGKFILGYQPRGKPRVEFVTISPDGFRYRSQMFPT
VNGLFRWFKDHFQEPVPGITPSSSSRTRTPASVNATPANINIADLTRAVNALPRNMTSQM
FSAIAAVTGQGQGQNANTTPAQWGSSQYGYTGGSSGGGGGNSSAYHVFATPQQPMSTPMM
TPSYSYTTPSQQTMGTPQYPSSTPLSSHGHTQSSQGQGHSSSNSHHGHSSNTPSSSSTSS
RGRTPQQPKSSGSTAVDWAKMAEQWLQDKEAERKKQKTPRMTPRPSPSPMIESTPMSIAG
DATPLLDEMDR
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgacagcgaggctgaggagtcagaggaggaatttgaggagaaagac
ctgaagcccaaaaaaacccaggcgtttatggatgatgaggaagaggaggaagagttgaac
acagaggaccaggatgagcacgggaacctgagggggctcatcgatgatgatgtggatgaa
gatgaagaagcggaagaaaagaagagcggaggagcgggtagcggcagcgactcagaggat
gaagtcagacacaggcgcaaaaaacgcaactatgatgactacctggatgatgatgacctg
gacctcattgaggagaacttgggggtcaaagtcaagaggaggaagaagaagtatgaccgc
gtgaagctgatggatgatgatgaagatgacgaaaaggaccagattgcagacgagatcttc
cacggaggagacggagagggggagctggaggagggagagaccgtcgacccacccctccat
cgccatggtgaacgccacgatgaagaggaggaagaggaaggagaggaggagtcagatatt
gacgactttattgtggacgacgatggccagcccatcacaaagaagagaggcaagttctca
ggatacacggacgcagccctccaggaggcccaggagatcttcggcggtgactttgacttt
gccgagtttgatgctgacggagcatatgaccagggtgaggaagaggaggaggaccaggac
gaagagagctgggaccggcccaagaagcagacgaagaggagagtggggaggaagagcatc
ttcgagatctatgagcccagcgagctggagagtagtcacatgacagaccaggacaacgag
atccgctccacagacatgccggagaggttccagctgcgttccatcccagtgaagcctgct
gaggataatgagttagagcaagaggcagagtggatctacagaaatgccttctcaaccccc
accatctccatgcaggagagtacagactacctggacagagggaccaccacaaacctcagc
aggaaaggccccagcaccatcgctaagatcaaggaggccctcaacttcatgaggaaccag
cactttgaggttccgttcatcgcattctacaggaaggagtatgtagaaccggagctcaac
atcaacgacctgtggaaggtctggcaatgggacgagaagtggtgccagctgaagagcagg
aagcagaacctgacacgactgttccggaggatgcagtcgcaccagtatgaacagatctct
gccgaccctgacaaacccctggctgatggcatcagacccctggacacggctgatatggag
agactgaaagacgtccagtccatagatgagctgagtgatgtgtacagccacttcctgctg
tactacggcagagacatccccaagatgcaaaacacagccaaggccgccagtaagaagaag
acgctgaggaagatcaaggaggttaacgaggatggtgaggaggaagaggtggaggtggag
gtggaggaagagcagaaggggccagacctgaagctggcatctcgtagagacatgtacagc
atctgtcagagcgcagggctcgacggcctggctaagaagtttggtctgactccagagcag
tttggggagaatctgagagacagctaccagcgtcacgagacagagcagttccctgctgag
cctgtagagctggccaaagactacgtctgcagccagtttaacagtcctgaggcggtgttg
gaggggactcgttatatggtggccatgcagatttccagggagcctctggtcagacacgtc
ctcagacagaccttccaggagagagccaagatcaatataaatcccaccaagaaaggaaag
aaggatatggatgaggcccattttggctactccttcaagtacctgaaaaacaagccagtg
aaggagctgaacggagaacagtttttaaagatgtgccaggctgaggaggagggacttctc
accattgacatctgcatcgacctcctaggggtcaaagggtttgcaggtgaccagacgtac
tttgatgagatcaagcaattctattacagagatgagttcagccaccaggtgcaggagtgg
aacagacagaggaccctggccatcgaacgctccctcacacagttcctctaccctcagatg
gccaaggaactcaagaacaaactcatcgcagaggccaaggacaacatcatcaagtcgtgt
tgcaggaggctgtataactggctgaaggtggctccctacagaccagaccagcagcaggcg
gaggaggaggatgatgatctgatggatgagagtcaaggaaaaggcatcagagtcctggga
gtggcctttgcagacagcagagacacgccagtgttctgttctctgatcaacggcgaggga
gaggtggtggacttcctccgtctgccttacttcctgaagaggaggaatgcatggagggag
gacgagagggacaaaaagctccaggacattgagaacctaaagaagttcctgatcagtaag
aaacctcacgtggtggctgttgctggggagaatagagatgcccacatgataatggaggac
attaagaggacagtgagtgagttggagcaggagtcttctctgcctgctgtgggagtggag
ctggtggacaatgaactggccatgctttacatgaacagcacgaagtctcagactgacttc
agggactaccctccgctgctgcgccaggccgtgtccgtagccaggaagattcaggatccc
atggtggagtactcgcaggtctgcagcacagacgaagacatcctctgcctcaaactacac
cctcttcaggagcatgtagtaaaggaggacctgctgaatgctctgtactgtgagtttata
aaccgggtcaacgaggtgggggtggatgtgaacagggccatatctcacccctacacacag
agcctggtccagttcgtttgtggcctcggacaaaggaagggatcgcacctgctcaagatc
ctaaaacagaacaacactcgtttggagaacaggactcagctggtcaccatgtgtcacatg
ggccccaaggtcttcatcaactgtgccggcttcatcaagatagacaccgcctcgctcgga
gacagtacggactcatacatcgaggttctggacgggtccagggtgcacccggagacgtat
gagtgggccagaaagatggcggtggacgctctggaatacgacgagtccgcggaggacgcc
aacccggccggtgcgctagaggaaatcctggaaaacccggagcgactcaaagacctggat
cttgatgccttcgctgaggagctggagagacagggttacggtaacaagggcataacgctg
tatgatatccgtgctgagttgagctgcaggtataaggacctgagagttccctacagagct
cctaacaccgaggaggtgtttaacctgctcaccaaggagacacctgagaccttctatata
ggtaagctgatcaccagtgtcgtgacaggcattgctcaccggcgcccacaaggggagagt
tatgaccaggccataaggaacgactctaccgggctgtggcagtgccccttctgtcaacag
gacaacttccctgaactcagcgaggtgtggaaccattttgacagtggatcatgtccaggc
caggccatcggtgtgaggtctcgaatggacaacggtgtccagggcttcatccccaccaag
ttcctcagtgacaaggtggtcaagcaccctgaggagagggtcaaggtgggtatgaccgta
cactgtcgcatcatgaagattgacattgagaagttcaacgtggacctgacgtgtcgtacg
tctgacctgatggataagaacaacgagtggaagcttcctaaggacacctactacgacttt
gacgcagagacagaagacactaaggcagaggaggaactcaagaagaaacagcagagaacc
acctatataaagcgtgtgatcgcccatccatcgtttcacaacatcaacttcaagcaggcc
gagaagatgatggagtccatggaccagggagatgttgtaatcaggcccagcagcaaggga
gagaaccacctcactgtcacatggaaggtggctgatggtatctaccagcatgtggatgtg
agagaggagggcaaggagaacgccttcagcctgggacacacactctggatctacacagag
gagtttgaggatcttgatgagatcacagctcgttatattcagccaatggcagcgtttgct
cgtgacctcctgggacataagtacttccaggactgtaacggaggggacaagaagaaaatg
gaggagttgttgattaggtgtaaaaaggaaaagcctgcgttcatcccctattttgtctca
gcctgtaaagacctgccagggaagttcatactggggtaccaacctcgcggaaaaccacgt
gttgagtttgtgaccatcagtcctgacgggttccgctaccgctcccagatgttccccaca
gttaacggactgttccgctggttcaaagaccacttccaggaaccggtaccaggcatcacc
cccagcagtagtagtcgaacacggacacctgcttctgtcaacgctacaccagctaacatc
aacatcgcagacctgacgcgagctgtcaacgctctcccgcggaacatgacttctcagatg
ttcagtgccatcgccgcggtgacagggcagggccagggccagaatgccaacaccacaccc
gcccagtggggctccagccaatacggttacaccgggggcagcagtgggggtgggggaggc
aactcctcagcctatcacgtatttgcaacgccccagcagccgatgtcgacgcccatgatg
acccccagctactcatacaccacccccagccagcaaaccatgggtacgccccagtacccc
tcctccacccccttgtcctcccacggacacacacagagcagccaagggcagggccacagc
agcagcaacagtcaccatggacactcgtccaacacaccttcctcctcctccacctcttcc
agaggacgcacgccgcagcagcctaagtcgagcggcagcacggcggtggactgggccaag
atggcggagcagtggctccaggacaaggaggcggagaggaagaagcagaagacccccagg
atgaccccacggccttcccccagccccatgatcgagagcaccccaatgtccatcgctgga
gacgcaacaccccttctggatgagatggaccgatag
DBGET
integrated database retrieval system
