Oncorhynchus mykiss (rainbow trout): 110534280
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Entry
110534280 CDS
T07259
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110534280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110534280
03009 Ribosome biogenesis [BR:
omy03009
]
110534280
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110534280
Spliceosome [BR:
omy03041
]
Complex A
U2 snRNP components
U2 related factors
110534280
Complex B
110534280
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110534280
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
90S particles
Helicases
110534280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_19
AAA_22
AAA_25
Cas3-like_C_2
nSTAND3
SRP54
Flavi_DEAD
AAA_29
nSTAND_NTPase5
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
110534280
NCBI-ProteinID:
XP_021474719
Ensembl:
ENSOMYG00000032089
LinkDB
All DBs
Position
10:53758834..53773112
Genome browser
AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRERDRDRDRDRDRDRDREVKPSVV
PPNTMMAVGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILAR
HQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTL
PPQQQQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSD
IKPEWLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgacgactactccaataaaaagcgatctgat
gggaaagaccgagatcgcgacagggaccgtgacgagcgctctaaagacagggagagggac
agggaccgcgacagagatcgggaccgggaccgagatagggaagtgaagccctctgtcgtg
ccccccaacaccatgatggccgttggaggcatgcttcctctcaagcagacagccatgcag
cagcagatcaacccgttcacaaacctgccccacacaccacgctactatgagatcttgaag
aagaggctgcagctgcctgtgtgggagtacaaggagcgcttcaatgacatcctggcacgc
caccagagctttgtgcttgtcggagagacgggctccgggaaaaccacacagatcccccaa
tggtgtgtggacatggtgaagggcttgggtggccccaagaaggcggtggcctgtacccag
cccagaagggtggcagccatgagcgtggcccaaagggtggccgacgagatggatgtcatg
ctgggccaggaggtgggctactccatacgatttgaggactgcagctccgccaagaccata
ctgaagtatatgacagacggtatgttgcttcgggaagccatgaacgatcccttgctggag
cggtatggcgtgatcatcctggatgaggcccacgagagaacgctggccacggacatccta
atgggagtattgaaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagt
gccacattagacgccgggaagttccaagtgtactttgacagctgtccgctgctgaccatt
cccggacgcacacaccccgtggagatcttctacacccctgagccggagcgggactacctg
gaagccgccatccgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgt
ctgctgttcctcaccggacaagaggaaattgacgaggcctgtaaacggatcaaacgggag
atcgacgacttgggacctgaagtcggagacatcaaagtcattccactatattccacactg
cctccccagcagcaacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcg
ataggaagaaaggttgtggtttcgacaaacattgctgagacatcccttaccatcgacgga
gtggtgtttgtgatcgatcccggttttgccaagcaaaaggtgtacaatcctcgtatcagg
gtggagtctctcctggtaacggcgatcagcaaagcctcggcgcagcagagggcgggccgt
gccggcaggacacggccagggaagactttccgcctctacactgagaaagcctacaagacc
gagatgcaggacaacacgtatcctgagattctccggtccaacttgggttctgtcgtgttg
cagttgaagaagctgggtatcgatgacctggtgcactttgacttcatggacccaccagcc
ccggagaccctgatgcgggcgctggagctgctcaactacctggcggcgctcaacgacgac
ggcgacctgacagagctgggctccatgatggcagagttcccgttggacccacagctggcc
aagatggtgatcgccagctgcgagttcaactgctccaacgagatcctctccatcaccgcc
atgctgtcagtcccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgag
tccaagatgcggttcgcccacatcgacggagaccacctgacgctcctcaacgtctaccac
gccttcaaacaaaaccacgagtctacacagtggtgctacgacaactttgtgaactaccgt
tcgctgatgtcggccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaac
ctgccccggcgcagcaccgaattcaccagcagggactactacatcaacatccgccgagcg
ctagtcacaggctttttcatgcaggtggctcatttggagcgcacgggccattatctcaca
gtcaaggacaaccaggtggtccagctacacccctctaccgtcctggaccacaagccagag
tgggtgctctacaatgagtttgtcctcacaaccaagaactacattcgcacctgctcggat
atcaaaccggaatggctggtgaaggttgctcctcagtactacgaaatgggcaacttccca
cagtgtgaagccaagaggcagttggagcgaatcgttgccaaactccagaccaaggagtat
tcccagtactga
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