Oncorhynchus mykiss (rainbow trout): 110534463
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Entry
110534463 CDS
T07259
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy02010
ABC transporters
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110534463
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110534463
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
omy02000
]
110534463
Transporters [BR:
omy02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110534463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
110534463
NCBI-ProteinID:
XP_036789492
Ensembl:
ENSOMYG00000022039
LinkDB
All DBs
Position
10:complement(62080881..62121847)
Genome browser
AA seq
2283 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTLQLVIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGETPGLVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGYKVLVRALRKLQGNTAGFKLKDFLRDKETLSSFLHRNASLSHHAVQQIVEADLNLE
KVLIGGFGVHLRDMCNTTSLEEFVTISDKNVSRLTQDIICKASPDWLNKAQDHFLSNLDF
LKPIRKDVKSDPEVVQKVSAATDGLLESLGALAVELASMKSWKEMRNEIHYLTVNATGSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGGNGSDDEPVSAYDNTSTPY
CNSMMRSLEASPVSRMIWRALKPLLMGKILYTPDTPATQRIIHEMNKTFQELGILRDLGG
MWEEMRPKVWTFMESSDEMHLVRTLLQNNASARFFNDRLAGTEWKAEDVARFLTKTAEDK
RPAGSAYTWREVFNETDDAIKTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAG
IVFPDIARSNSSDLPGNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDVIEQGIVRAVTGSKEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAL
IIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISASLLVVILKMGNLLPYSD
PCVVFLFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSICLMLFDSFL
YGVMTWYIEAVFPGQYGIPRPWYFPFAKSYWCGEKQGKNIQERKEGNAEAVCIEEEPSHI
EPGVYIKNLVKVYSHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQI
VNDIGLPHKRQCRSNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFD
LTLSSCRNSSSSSSVSYSKKVGLPQPQPQALTVLKGDSVSESSSDAGLGSEPESEATTID
VTMISNVIFKHVPAARLVEDLGHELTYVLPYEAAKGGAFVELFHEVDDRLSDLGISSYGI
SDTTLEEIFLKVAEDSGVDAAELPNSDGTIPARRHRRHAFGDHQSCLKPFTEDDAFDFND
SEGDPESRETDWLGGSDGKGSYQVKGWRLIRQQFVALIWKRFLYARRSRKGFFAQIVLPA
VFVCIALVFSLIVPPFGKYPSLELEPGMYEEQFTFISNDAPEDADTNKLLGALTNYDGFG
SLCNSPHAPCNTLDDEWAIPEVPESVRDIFMNGNWSMENPSPLCECSCEGRKKMLPECPA
GAGGLPPPQVKISDQGTLQNLTGRNISDYLVKTYAQIIGKSLKNKISVNEFRYGGFSLGA
RNSQLLPPGDDIDQAISEIRRRFHLERGTAADRFLASLSSFIQGLDTKNNVKIWFNNKGW
HSIGSFLNVMNNGILRASLPAGQDSSKYGIRAFNHPLNLTKEQLSQVALMTTSVDVLVSI
CVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWLSNFIWDMCNYIVPATLVII
IFICFQQDAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGI
NGSVSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENR
FRSPLAWDMVGKNLFAMAVQGVVFFTITVLIQYRFCIKARSLRTDQKPIGEEDEDVARER
QRILGGGGQSDILELKQLTKVYNRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKML
TGDSIVTSGEAYLAGKSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEK
EVCEVAEWGIRKLGLIKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKA
RRALWNCILSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY
TIILRVAGPDPDLRPVMEFIEKELPGSTLKEKHRNMLQYQLSSSKTSLARIFSILAKNKE
WLHIEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISVHKREAVAVDITQLKSFLTDEKARE
SCV
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggccgtctctactcaactgggcttactgctgtggaagaacttcacctacagacggaga
cagacactccagctagttatcgagataatatggccgctcttcatcttcttcatcctcata
tctgtgaggatgcattacccgccctacgagcaacatgagtgccatttccctaacaaggcc
atgccctcggcgggcaccttgccctgggtacaagggatcatctgcaacgccaacaacccc
tgcttccgccaccccacaccaggagagaccccagggctggtgggcaacttcaacgattct
ataatctcccgtctgttcatcgatgccaagaagatcctcctctacagccagaatgacaag
agcttcgagggctacaaagttctggtgcgggctctgaggaaactacagggcaacacggca
ggtttcaagctgaaggactttctccgcgataaggagaccttgtcgtcgttcctgcatcgc
aacgcctccctatcccatcacgccgtccagcagattgtggaggctgacctcaacctagag
aaggtcctgattggaggtttcggcgtccatcttagagatatgtgtaacaccacttctctg
gaggagtttgtgaccatctccgacaagaatgtgtcacggctcactcaagacatcatctgc
aaggcctcccctgattggctgaacaaggcccaggaccacttcctgtccaacctggacttc
ctaaagcccatacggaaggacgtgaagtccgaccctgaggtcgtccagaaggtatccgcg
gcaaccgacggtctgctagagagcttgggagcgctggctgtagagctggccagtatgaag
agttggaaggagatgcgtaacgagatccattacctgacggtcaacgccacgggctccccc
agccacatgtaccaggccgtgtcccgtatcgtctgtggccaccccgagggcggcggactg
aagatcaagtcgctcaactggtacgaggacaacaactacaaggccctgttcggtaaccac
ggcggcaacggcagcgacgacgaacccgtgtccgcctacgacaacacctcaactccgtac
tgtaacagcatgatgaggagtctggaagccagccccgtctccaggatgatctggagggcc
ctgaagcctctcctcatgggaaagatcctctacacccccgacactcctgccacacagagg
atcatacacgagatgaacaagacgttccaggagctgggtatcctgagggacctgggtggg
atgtgggaggagatgaggcctaaagtctggaccttcatggagagcagtgatgagatgcac
ctggttcggacgctgcttcagaacaacgccagcgcccgcttctttaacgaccgcctggct
ggcacagagtggaaggcggaggacgtggcccgcttcctgaccaagactgcggaggacaaa
cgccccgccggctcggcctacacctggagagaggtgttcaacgagaccgacgacgctatc
aagaccatctcccgctttatggagtgtgtgaacctggataaactagagccagtggccaat
gaggaaagactggtcaacaaatccatgggtctcctagacaaccagaagttctgggctggg
atagtgttcccggacatcgcccgtagcaacagttctgacctgccgggtaacgtcaactac
aagatccgcatggacatcgacaatgtggagcgcaccaacaagatcaaggacggttactgg
gaccctggtccccgggccgacccctttgaggacctgcgctacatctggggcggtttctcc
tacctgcaggacgttatagaacagggcatcgtcagggcggtgacaggcagtaaggagaag
actggagtctacatccaacagatgccttacccctgttacgtggacgatatgttcctgcgg
gtgatgagtcgctccatgcctctcttcatgaccctggcctggatgtactctgtggccctc
atcatcaagggcgtggtctatgagaaggaggcgcggctcaaagagaccatgaggatcatg
ggattggacaacggcatcctgtggctcagctggttcatcagcagcctcatccccctgctc
atctccgcctcgctgctggtggtcatactcaagatggggaacctgcttccctacagcgac
ccttgcgtggtcttcctgttcctggcttccttcgctgtggtaaccatcatgcagtgcttc
ctgatcagtaccatcttctcccgtgccaacctggcggcggcctgcggaggaatcatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactatgtgggcttcggg
gctaaagtcattgtgagcctgttgtccccagtggcgtttgggttcggctgtgagtacttt
gccctgtttgaggagcagggagtgggaatccagtggtccaacctgttgtccagccccttg
gaggaggatagctactccctcaccacctccatctgtctcatgctgtttgactccttcctc
tacggggtcatgacctggtacatcgaggctgtcttccctggccagtatgggatccccaga
ccctggtacttccccttcgccaagtcctactggtgtggagagaaacaagggaagaatata
caagaaagaaaggaaggaaacgcagaagctgtgtgcatcgaagaggagccgtctcacatc
gagcctggtgtttacatcaagaacctagtgaaggtgtatagccatggcaacaagctggct
gtggacgggttgaccctgggtttctacgaggggcagatcacctccttcctggggcacaac
ggagccgggaagaccaccaccatgtccatcctgacgggtctgttcccgcccacctctggc
accgcctacatcctgggcaaggacatccgctcggagctcagcgccatccgacagaacctg
ggcgtctgcccgcagcacaacgttctcttcagcatgctgacggtggaggagcacatctgg
ttctatgcccgtctgaagggtctgtctgaggagaaggtgaaggctgagatggagcagatc
gtcaacgacatcggcctgcctcacaaacgccagtgtcgtagcaacacgctgtccgggggc
atgcagaggaagctgtcagtggcgttggcgttcgttggagggtcaaaggtcgtgatcctg
gatgaacccactgctggagtcgacccctacgcacgccggggcatttgggacctgcttctg
aagtatcgtgcaggccgcaccatcatcctctcaactcaccacatggacgaggcggacatc
ttgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcctccctg
ttcctgaagacccagctggggacgggctactacctgaccctggtgaagagagacttcgac
ctgaccctcagctcctgtaggaactcctccagcagcagctctgtctcctacagcaagaag
gtgggcctccctcagccgcaacctcaggccctcacagtcctaaagggggacagtgtttct
gagagcagctctgatgctggactgggtagtgaacctgagagtgaagccaccactattgac
gtaaccatgatctccaatgtgatcttcaagcacgtccccgctgccaggctggttgaggac
ctgggccatgaactcacctacgttctgccctacgaggcggccaaaggtggagccttcgtg
gagctcttccacgaggtcgacgaccgcctgtctgacctcggcatctccagctacggcatc
tcagacaccaccctggaagagattttcctgaaagtagcagaggacagtggagtggacgct
gctgaacttcccaactctgatggcaccatcccggctcgtaggcaccgcagacacgcgttc
ggagaccaccagagctgcctgaaacccttcaccgaggacgacgctttcgacttcaacgac
tccgaaggtgacccagaatctcgtgagacggactggctgggaggctcggatggtaaaggc
tcgtatcaggtcaaaggctggcgtctgattagacagcagtttgtggcgttgatatggaaa
cgcttcctgtatgcccggcgctccaggaaaggcttcttcgctcagatcgtgcttcctgct
gtgtttgtgtgcatcgccctcgtcttcagtctcatcgtccctccgtttggaaagtacccc
agcctggagctggagcctggcatgtatgaagaacagttcaccttcatcagcaacgacgcc
cctgaggatgcagacactaacaagctgctgggtgccctgacaaactatgatggctttggt
tcactctgtaactcacctcatgctccttgcaacacgttggatgatgagtgggccattcct
gaggtaccggagagtgtgagggacatctttatgaatggcaactggagtatggaaaacccc
tctccactctgtgagtgcagctgtgaaggacgcaagaagatgctacctgaatgcccagcg
ggagctggtggtcttcctcctccacaggtgaaaatcagtgaccaaggtaccctgcaaaat
ctgactggcagaaatatctcagattacctggtcaaaacctatgctcagattatcgggaaa
agtttgaagaacaaaatctcggtcaatgaattcagatatggtggattctcattgggcgct
aggaacagtcagctcctcccaccaggtgatgatattgatcaggccatctctgagatcaga
cgacgcttccacctggaaagaggcactgctgctgaccgtttccttgccagcttatccagt
tttatccagggactggacactaagaacaacgtcaagatctggttcaacaacaaggggtgg
cacagcatcgggtctttcctgaacgtgatgaacaacggaatcctgcgcgccagcctgccc
gccggccaggactccagcaagtacggcatccgtgccttcaaccacccactcaacctcacc
aaggagcaactgtcccaggtcgcactgatgaccacctctgtggacgtgctggtgtccatc
tgcgtgatcttcgccatgtctttcgtcccggccagcttcgtagtcttcctcattcaggag
agagtcaacaaggccaaacacatgcagttcatcagtggggtgcagcccttcctctattgg
ctgtcaaacttcatctgggacatgtgtaactacatcgtccctgctactctggtcattatc
atcttcatctgcttccaacaagacgcctacgtctcctccaccaacctgcctgtactggct
ctgctgctgctgctctatgggtggtccatcacgcccctgatgtacccggcgtccttcttc
tttaagatccccagcacggcctacgtggtgctcacctccgtcaacatcctcatcggcatc
aacggcagcgtctccaccttcgtcctcgagctcttcggcagcaacgagatcggagggatc
aacgacatcctgaagaacgtgttcctgatcttccctcacttctgtctgggccgaggcctc
atcgacatggtgaagaaccaggccatggccgacgctctggagaggtttggtgagaaccgg
ttccgttcccctctggcgtgggacatggtgggcaagaatctgttcgccatggctgtgcag
ggcgtggtcttcttcactatcaccgtgctcatccaataccgcttctgtatcaaggccaga
tctttgcgcaccgaccagaaacctatcggtgaggaggatgaagacgtggccagagagagg
caaaggattctgggaggagggggacaatctgacattctggaactcaagcagctgaccaag
gtgtacaatagaaaacagaaaccagcagtggatcgtctttgtgtgggaattccaccagga
gagtgttttggtctgcttggagtcaacggagcaggaaagacgagcaccttcaagatgctg
actggagactcaatagtcacgagtggagaagcttacctggcgggaaagagtgtgttgacg
gagataaacgaggtgcaccagaacatgggctactgccctcagtttgatgctatcaatgac
ctgctgactggcagggagcaccttgagttctacgccatcctgaggggggttccagagaag
gaagtgtgtgaggtggcagagtggggcatccgtaaactaggcctgatcaagtatgtggac
aaggcagcagggagctacagtggagggaacatgaggaaactctccacggccatggcactg
atcggtggtcccccggtggtcttcctggacgagcccaccactggtatggaccccaaggcc
agacgggctctgtggaactgcattctcagtatcgtcaaggaggggcgatcggtggttctc
acctcgcacagtatggaggaatgtgaggccctgtgtacgcggatggccatcatggtcaat
gggaggttccgctgcctgggcagcgtacagcacttaaagaacagatttggggatggctac
accatcatcctccgggtggcaggaccagacccggacctgaggccggtgatggaatttatt
gagaaggagcttccaggcagcactctgaaggagaagcacaggaacatgctgcagtatcag
ctgtcctcctccaaaacctccctggcacgcatcttcagcatcctggccaagaacaaggag
tggctgcacattgaggactactccgtttcccagacaacactagaccaagtgtttgtcaat
ttcgccaaggaccaaagtgacgaggaccacttaaaagacatttctgtgcacaagcgagag
gcggtggcagtggacattactcagctcaagtctttcctcaccgacgagaaggccagggag
agctgtgtgtga
DBGET
integrated database retrieval system
