Oncorhynchus mykiss (rainbow trout): 110534832
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Entry
110534832 CDS
T07259
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110534832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110534832
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110534832
Spliceosome [BR:
omy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110534832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
Cas3-like_C_2
DUF1299
Motif
Other DBs
NCBI-GeneID:
110534832
NCBI-ProteinID:
XP_036789660
Ensembl:
ENSOMYG00000029045
LinkDB
All DBs
Position
2:complement(35108207..35122317)
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AA seq
633 aa
AA seq
DB search
MANLEQWVSDSLHDILALSDRYVAQFMIGSARKSLSAQDFVAHLKSMGTIDINQRVIAFA
QELYEKIPRKQVVEKPARAIERRVMEIERKNRNYTLLSDSESDGEAVREKEKKKSKDRGD
KRKHLRKREESQSSSEEETRKSCYSSFLKGPSSFSVVSWAMATRSPVRRMKRRRHLSYTK
APEADYLEACVVSVLQIYVTQPPGDCLVFLTGQEEIETCCELLQERCRRLGSKISELLVL
PIYANLPSDMQAKIFSPTPPGSRKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTG
MESLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTDLGNVVL
LLKSLGINDLIHFDFMDPPPHETLVLALEQLYALDALNHLGELTKLGRRMAELPVDPMLS
KMILASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLNVY
TQWLESGYSTQWCYENFIQFRSMKRARDVREGLMDRIEVEVCSSGGDIVPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSWL
LEVAPHYYKNKELEDSSSKKMPRKQGKAKEELG
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctagagcaatgggtgagcgacagtctgcacgacatcctcgcccttagtgac
agatatgtcgcccagttcatgatcggctctgcgcgtaaatccttgagcgctcaagacttt
gtggcccacctcaagtcgatgggcaccatcgacattaatcagagagtgatcgcctttgca
caggaactgtatgaaaagattcctcgtaaacaagtcgttgaaaagccagccagagcgata
gagcgacgtgtcatggagattgagaggaagaatcgaaattacaccctactgtcggacagc
gagagtgacggagaggcggtgagggagaaggagaagaagaaaagtaaagaccgaggcgat
aagaggaagcacctcaggaaaagggaggagagtcaatcatctagtgaagaggagacccgt
aaaagctgctactcctcttttctaaaaggcccttcatctttctcagtagtaagctgggcc
atggcgaccagaagtccagtaagaaggatgaagaggaggaggcatctctcgtacactaag
gctcctgaggcagactacctggaggcctgtgttgtgtcggtgctacagatctacgtcaca
cagccccccggagactgtctggtcttcctcactggacaggaggagatcgagacttgctgt
gagctgctgcaggagagatgcaggcgtctgggctctaagatatctgagctcctggtgctt
cccatctacgccaacctaccttccgacatgcaggccaagatcttcagccccacaccacct
ggctcacgcaaggtggtggtggccactaacattgcagagacctctctaaccatcgatggg
atcatatacgtcatagatccaggcttctgcaagcagaagagctataacgcccgcactggg
atggagtctctgattgtcacgccttgctcaagggcctcagccaatcagcgagcaggtcgt
gcaggcagagtggctgctgggaagtgtttccgtctctacactgcgtgggcgtttaaacac
gagatggaggagtccaccgtgcccgagatccagcgaaccgacctgggcaacgtagtgcta
ctgctcaagagcttgggaattaatgaccttatccactttgacttcatggacccgccccct
cacgagaccctggtgttagctctggagcagctgtacgcactggatgcactcaaccacctc
ggagagctcaccaagttgggccgcaggatggctgagctgccggtggaccctatgctgagc
aagatgatcctggcctcagaacagtataagtgttctgaggaggttttgaccattgctgct
atgctgtctgtgaacaactccatcttctaccggcccaaagacaaggtggttcacgctgac
aacgccaggcagaactttgtggtccccggaggagaccatatggtgctgctcaacgtctac
acacagtggctggagagtggctactccacccagtggtgctatgagaacttcatccagttc
cgctccatgaagcgggcgcgggatgtcagggagggcctgatggacaggatcgaggtggag
gtgtgcagctcaggcggcgacattgtgcccatccgcaaggcagtgacggcggggtacttc
taccacacggcgcggcttagcaaggggggctacaagacggtgaagcaccagcagacagtc
tacgtccaccccaacagctccctgttcgaggagcagccccgttggctcatctaccacgag
ctggtcttcactaccaaggagttcatgagacaggtgattgagatagacagcagctggctg
ctggaggtggctccccactactacaagaacaaggagctggaggacagcagcagtaagaag
atgcctcgcaaacagggcaaggccaaggaagagctgggctaa
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