Oncorhynchus mykiss (rainbow trout): 110535101
Help
Entry
110535101 CDS
T07259
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
110535101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
DcrB
Motif
Other DBs
NCBI-GeneID:
110535101
NCBI-ProteinID:
XP_036792096
Ensembl:
ENSOMYG00000003400
UniProt:
A0A8K9V410
LinkDB
All DBs
Position
11:68687221..68847333
Genome browser
AA seq
1527 aa
AA seq
DB search
MASAANASSEQENRDPDRPRITRRNRGNYLSTAPDLEYLQRPSYCDAAFALQQISEGNAT
GRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLVFGAFAVGLRAANLETDVEKLWVE
VGGRVNQELKYTRLKMGEESMFSPQLMIQAPRQEGANVLTLEALQQHLDSAISASQVHVY
LFNRQWKLEHLCYKSGEMDTEAHVVNQIIEKLHPCLIITPLDCFWEGAKLQSGLVYLPGI
SHPLQWTNFDPKEFLTVLRALKVQVDSWEVMLEKADVGHGYMDRPCLNPQDPDCPLTAPN
KNTTKPFDLARILTGGCHGLSRKYMHWQEELIVGGTTKNGTGPLLSAQALQTMFQLMTPK
QMFEHLKGYEDVSHINWNQDKAAAILEAWQRKYSEVVKQSVAANSSQKVLTFTTTTLEDI
LKSFSDVSIIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSL
LGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDI
FCCFYRVIQIEPQVHVDGADSSRYSPPHPSYHTTPPTYSSSPPSYSSHGFSQQTQITMQS
TVQLRTEYDPRTQAFYTTAEPRSQISVQPFTPMPVATGPANNPNTSHGNNNNHHSNHLSR
SGSSSGHVNNHGSRGSGSVPSPPQSSSGIPTVSPQAGEVVCVSGESASSTRDLLSQFGGA
SLGLRCLEPHCSRWTLASFAEKHYAPFLLQPTTKVVVILLFLALLVVSLYGTTRVRDGLE
LTDIVPRETSEYDFIGAQFKFFSFYNMYVVTQRAEYSQAQPLLYQLHHSFNTVPYVLRED
DGQLPRMWLHYFRDWLQALQEAFDQDWEAGWITQSSYRNGSDDGVLAYKLLVQTGRRERP
ISVNQLTRQRLVDADGIINPVAFYIYLTAWVSNDPVAYAASQANIRPHPPEWLHDRTDSM
LETQLSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICSNYSRQGLPSYPNGYPFL
FWEQYVGLRHWLLFSISVVLACTFLVCALFLLNPWTASIIVLVLSLMTVELFGMMGLIGI
KLSAVPVVILIASVGIGVEFTVHVALVFLTAIGDRNRRAVLALEHMFAPVLDGAFSTLLG
VLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSYFGPYPEVTPVDGRSQLPTP
SPEPPPPVVHFSVHPCHTTSGTGTGTGSDSSDSEYSSNTTASGISQDLQQYDLPTTRSRA
GRAEEVRRGAVPRRTARQGNATAYSLSSSVLPESDAHPGASRRFSKRDLQSFPPARPRMA
FETEAGGHYGSGGHFVSGGHRERSAGHRTRPSHNPRPNHHQPQHSNPAPTYCQPITTVTA
SASVTIAVHSTSPPTQSPTSSHPGHTAADSYHTARGAEPAPAFQHPHVPLEVHTGCRGTK
MDTKVEAMELQDVECEAVESDCDKRAS
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcagctaatgcctcctctgagcaggaaaacagggaccccgatcggccgagg
ataacgcggaggaacagggggaactatctctcaacagcgcctgatttggagtatttgcag
cggccaagttactgcgatgcagctttcgccttgcagcaaatatccgaggggaacgcgact
ggaagaaaagcaccgctgtggctgagagcgaagtttcagagactcttgtttaaattgggc
tgttacatacaaaagaactgtggaaagtttttggttgtgggtctattggtattcggagct
ttcgctgttggtttacgggcagctaatctggaaaccgacgtggagaaactctgggtagaa
gtgggcggcagggtgaatcaggagctgaaatacacacgtctgaagatgggcgaggagtcc
atgttcagtccccagctgatgattcaggcaccgcgccaggagggcgctaacgtgctcact
ttggaggcgctacaacaacacctggactcagccatcagtgccagccaagtgcacgtttac
ctctttaacagacaatggaaattggaacatttatgctacaaatcaggagaaatggatact
gaagctcatgttgtgaaccagatcattgaaaagctccacccctgtctcatcatcactccg
ctggactgtttctgggagggagccaagctccagtctggattggtctacctccctggcata
tcacaccctctgcagtggaccaactttgaccccaaggagtttctgacagtgcttcgggct
ctgaaggtccaggtagacagctgggaggtgatgctggagaaggctgacgtgggacatggc
tacatggaccggccatgtctcaacccccaagaccccgactgtcccctcactgcccccaac
aagaacaccaccaagccctttgacttggctcgcatcctgactggcggctgccatggcctc
tccaggaagtacatgcactggcaggaagagctgattgtaggggggaccaccaagaacggc
accggaccactactcagtgcccaggcgttacagaccatgttccagctgatgacccctaag
cagatgtttgagcacctgaagggctatgaggacgtgtcccatatcaactggaaccaagac
aaggccgcagccatactggaggcctggcagaggaaatactcagaggtggtaaaacagagt
gtagcagccaactcgtctcagaaggtgttgacgtttaccaccaccactctggaagacatc
ctcaagtctttctctgatgtcagcatcatacgagtggccagcggctacctgctcatgttg
gcctatgcctgtctgaccatgctacgctgggactgtgctaagtctcagggagctgttgga
ctggctggtgtcctcttggtggcgctgtctgtggctgcaggcctggggctctgctctctg
ctgggcatatctttcaacgctgccaccacacaggtgcttccgttcctggcactaggtgta
ggtgtggatgatgtgtttctcctggcccatgccttcagtgagacgggacagaacaagagg
atcccatttgaggaccgtacaggggagtgtttgaagaggacaggggctagtgtagctctc
acctccatcagtaacgtcactgctttcttcatggcagctctcatccctatacctgcccta
cgagccttctctctgcaggctgcggtggtggtcgtgtttaactttgctatggtgctgctc
atcttccctgccatcctcagtatggacctgtatcgcagagaggaccggcgttttgacatt
ttctgctgcttctacagggtgatccagatcgagccccaggtccacgtggacggagcggac
agcagtcgctacagcccccctcacccctcctaccacaccacccctcccacatacagcagc
tcacccccgtcctacagcagccatggtttctcccagcagactcagatcaccatgcagtct
actgtccagttgaggacagagtacgaccccaggactcaggccttttacactacggccgaa
cccagatcgcagatctccgtacaacccttcacacccatgcctgtcgccaccggccccgcc
aacaaccccaacaccagtcacggaaacaacaacaaccaccacagcaaccatctcagccgg
agtgggagtagcagtggtcacgtcaacaaccacggtagccgtggttcaggctcggtccct
tctcctccccagtcatcctctggcatccccactgtctccccccaagcgggggaggtggtg
tgtgtgtcgggggagagtgctagctccaccagggatctgctgtcccagtttggaggggcc
tctctggggctacgctgtctggaaccccattgctcccggtggaccttggcctcctttgcc
gagaagcactacgcccccttcctactgcagcccaccaccaaggtggtggtcatcctgttg
ttcctggccctgctggtggtcagtctgtacgggaccacacgggtgcgggacgggctggag
ctgaccgacatcgttcccagggagaccagcgagtacgacttcatcggggcccagttcaag
ttcttctctttctacaacatgtacgtggtgacccagcgggcggagtactcccaggcccag
ccactgctctaccagctgcaccacagctttaacacagtcccctatgtactgagagaggac
gacggacagctaccacgcatgtggctccactacttcagggactggttgcaagctctgcag
gaagcatttgaccaggactgggaagcaggttggatcacacagagcagctacaggaacggt
tcagacgacggggtcctggcctacaaactactggtacagaccggacgcagggaaaggccc
atcagcgttaaccagctgactaggcagcgcttggtggatgcggatggcatcatcaacccg
gtggcattttacatttacctgactgcgtgggtcagcaacgacccggtggcgtacgcagcc
tcgcaggccaacatacggccccaccccccggagtggctccatgaccgcacagactccatg
ctcgagacacagctcagcattcctgctgccgagcccatcgaatatgcacagtttccattc
tacctcaacgggctccgcgagaccccccagtttgtggaggccatcgagtcggtgcgagcc
atctgcagtaactacagccgccagggcctacccagctaccccaacggctaccccttcctc
ttctgggagcagtacgtaggcctcagacactggctgctgttctccatcagcgtggtgcta
gcctgcaccttcctcgtctgtgccctctttctgctcaacccctggactgccagcatcatc
gtcctggtcctgtctctgatgaccgtggagctgtttggtatgatggggctgatagggatc
aagctcagtgctgttcctgtggtcatcctcatcgcctctgtcggcataggagtagagttc
actgtacatgttgctctagtgttcctcacagcgataggggaccgtaacagacgggcagtg
ctggcgttagaacacatgtttgctcctgtgttggacggagccttctctactctactagga
gtcctcatgctagcaggctctgagtttgacttcatcgtcaggtatttctttgctgtgctg
gccatcctgaccattctgggggtgctgaatggtttggtccttctccctgtgttgctgtct
tactttggcccctatccagaggtgacccctgttgatgggcgtagccagttacccaccccg
tccccagagccccctcctcccgtggtccacttctccgtccacccctgccataccacctca
gggacggggacaggtacaggctctgactcgtcagactctgagtacagctccaacaccacg
gcctcgggcatcagccaggacctgcagcagtacgacctccccaccactagaagcagagct
gggagagcagaggaggtgcgacgaggagcagtgccaagaaggacagctagacagggaaac
gccacagcctactctttgtcttcttcggtcctgccggagtcggatgcccaccccggtgca
tcccgtcgcttcagcaagagggacctacagtcctttcccccagcccgcccacgcatggct
tttgaaactgaggctggaggccattacggctccgggggccattttgtctcgggaggccac
cgagaacgttctgcggggcacagaactcgtccatcccacaacccccggcccaatcaccac
caacctcagcactctaatcccgcccctacttactgccagcccatcaccacggtaacggcc
tctgcatcggttaccatcgctgtccactctacctctccccccactcagagccccacctcc
tctcacccaggacacactgcagcggacagttaccacacagcaaggggcgcagagcctgcg
cctgccttccagcacccccatgtgccactggaggtccatacaggttgcagaggaaccaag
atggacaccaaggtggaggccatggagctccaggatgtggagtgtgaggcagttgagagc
gactgtgataagagggcaagctga
DBGET
integrated database retrieval system
