Oncorhynchus mykiss (rainbow trout): 110535109
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Entry
110535109 CDS
T07259
Name
(RefSeq) whirlin
KO
K21879
whirlin
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
omy03037
]
110535109
Cilium and associated proteins [BR:
omy03037
]
Primary cilia and associated proteins
USH complex and associated proteins
110535109
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Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Cornifin
USH1C_N
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
110535109
NCBI-ProteinID:
XP_036792237
Ensembl:
ENSOMYG00000029199
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All DBs
Position
11:complement(72763000..72842417)
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AA seq
981 aa
AA seq
DB search
MMNSDLEHVSLNSTTASNSGTGSGGRGLSANVRKLHNALNLLLTDFEREQFIHCLNVYHA
KRNVFDLVQTLKIILNTPNKRQLLPMLRLVIPRSDQLLFDQYTSEGLYLKTDHLPLNSVN
NPESFGGVGNTAVGEIREVTLRRSKSNEGLGFSIRGGSEHGVGIYVSLVEPGSFAENEGL
RVGDQIVTVNGMLFDRVSHMEAVKVLKGCKKLAMSVCSVGRIPGGYVTNNIYAWVDPHGR
SVSPPSDLEQQSTLGPQHSQRRTGHTQEKTVNLNLDDGLSLGLMIRGGAEYGLGIYITGV
DPGSAADHGALKVGDQLLEVNGRSFVAIPHDEAVRILKTCRHLLVRVRDVGRVPHARTVV
DQTKWISSPITPSPPPITESTASPAATRPSSARATPVLGKSFFMWVHSFIPSPHPSFYPS
NQSVCQGVGPLGFQVSLEEQAFLLLTDPERQTMGYYLREYQEGHIGLEPLTMALFELFNT
RAKLSLLSEVRSQVAPQELELYDGLVLHREREALKAWHGGIGSLHPVHPYSRCLHAEPSA
SHIHSNPATLCSAKKECSHGDIVQQDPGATTNVIPDVTLNEVQSTAESPPFFKPPPPPGP
GQTQPRHPRDREREQSKRFLSRHSQSGLVFTAPTRLHQECHHKHLKAFQSFSNHQTSNSP
SSELHHICPNPGHHNSSNPGHHNSSNPGHHNSSNPGHHNSSNPGHHNSSNPGHHTTPNPG
HHTTPNTGHHTTPNTGTGHSVYPSSGNDTSMNSLHHTCQSSLHISTTTSSDHHTPQTHHG
CSSSGHHSCPGSPHPKHSGPQNKDTFIKLPIFRSCSHEKPLSDSGQTLSEDSGVDIAEAR
GLSKDSNPWPTKNQASQATQGPHGAQGSAVLASKQQPGSPVPILTLVRVVKNANTLGIAI
EGGANTRQPLPRIVTVQKGGSAHSCGQLKVGQVILEVNGVSLRGREHRDAARIIAEAFKT
KEKDHIDFLVTEFNTALLQGL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacagtgatttggagcacgtttcactcaattcaacgacggccagcaactcaggg
actgggtcgggcggccgagggctgtcagccaacgttcggaagctgcacaacgcgctcaac
ttgctgctcactgacttcgagagagaacaattcatccactgcctcaatgtttaccacgct
aaacgcaacgtcttcgacttggttcaaactctcaaaataatcctcaacacgccgaacaaa
cgacaactcctccccatgttgcgtttggtcattccccgctcagatcagctgttgttcgac
cagtatacttccgagggcctgtaccttaaaacggatcatctaccactaaacagtgtcaac
aaccctgaaagctttggaggagtaggcaatactgctgttggagagatccgcgaagtgaca
ctgagacgcagcaagagcaatgagggcttagggttcagtatccggggaggttctgagcac
ggtgtgggaatctatgtgtcgctagtagaacccggatcttttgccgagaatgaaggactg
agggtcggggatcagatagtgactgttaacggcatgctgtttgacagagtctcacacatg
gaagcagtcaaggtcctgaaaggctgtaagaagctggccatgtcagtttgttcagtaggc
cggatccccggggggtatgtcaccaacaacatttatgcctgggtggatcctcatggccgc
agtgtgtcccctccctccgacctggagcagcaaagcaccctgggaccacaacacagccag
agacgtacaggacacacacaggagaagacagtaaacctgaacctggacgatggtctctct
ctgggcctgatgatcagaggaggggcggagtatggcctgggtatctacatcactggggta
gaccccggctcagctgcagaccacggggcactcaaggtgggcgaccagttgctggaggtg
aatgggcggagcttcgtggccatcccccatgacgaggcggtgaggatcctgaagacgtgt
cgtcacctgctggtgagggtgagggacgttggccgcgtgccccatgcccgcaccgtggtg
gaccagaccaaatggatcagcagccccatcacccctagcccaccgcccataacagagagc
accgccagcccagccgctacacggccatcttcagcgcgggctacacctgtattaggaaag
tcttttttcatgtgggttcattcattcattccctccccccacccctccttctatccctcc
aatcagtctgtgtgtcaaggtgtggggcccctgggtttccaggtgtctctggaggagcag
gccttcctgctgctgacagacccagagagacagaccatgggctactacctgcgggagtac
caggagggacacatcggcctggagcccctgaccatggccctgtttgagctcttcaatact
cgtgccaagttgtccctgctatctgaggtgcgtagtcaggtagctccccaggaactggag
ctgtatgatggcctggtgctgcaccgcgagagggaggctctgaaggcctggcacggagga
ataggatccctacaccctgtgcacccatacagccgctgtctacacgctgagccctcagcc
agccacatccactccaacccggccactctctgctctgccaagaaggagtgctcacatggt
gacattgtacagcaagatccaggggcaaccactaatgtcatacctgacgttacattgaat
gaagtgcagtcgacagctgagtctcctccgttcttcaagccgcctcctccccccggaccc
ggacagacccagcccagacatccgagggacagggagagggagcagtccaagcgcttctta
tccagacactcccaatctggcctggtctttactgcccccaccaggctgcaccaggaatgt
caccacaaacaccttaaagccttccaaagcttctccaaccaccaaacgtccaactcccct
agctctgagctccatcacatctgtcccaaccctggccatcataatagctccaaccctggc
catcataatagctccaaccctggccatcataacagctccaaccctggccatcataacagc
tccaaccctggccatcataacagctccaaccctggccatcatactacccccaaccctggc
catcataccacccccaacactggccatcataccacccccaacactggcactggccatagc
gtctatccaagctctggcaatgacacatccatgaactctcttcaccacacctgccaaagc
tccctccacatctccacaactacctcctccgaccaccacaccccccaaacacaccacggc
tgctccagctccggccaccattcctgccctggctcccctcatcccaagcactctggtcct
cagaacaaggacacattcatcaagcttcccatcttcagatcctgctcccatgagaagcct
ctgtcagacagtggtcagactctgagtgaggacagtggggtggacattgctgaggcacga
gggctcagtaaagacagcaatccttggccaactaagaaccaggccagccaggccacacaa
gggccccatggggcccaggggtctgcagtactggcatccaaacagcagcccggctctcca
gtgcccatacttactctggtacgtgtggtaaagaatgccaacactctgggcattgctata
gagggaggtgcaaacacacggcagccactgccacgcatcgtcaccgtacagaaggggggc
tcggcacacagttgtgggcagctgaaggtgggacaggtgattctggaggtgaacggggtc
tccctgaggggtagagagcaccgggacgctgctcgcatcatcgctgaggccttcaagacc
aaagagaaggaccacattgacttcctggttaccgagtttaacacagccctactgcaaggc
ctttag
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