KEGG   Oncorhynchus mykiss (rainbow trout): 110535109
Entry
110535109         CDS       T07259                                 
Name
(RefSeq) whirlin
  KO
K21879  whirlin
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:omy00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:omy03037]
    110535109
Cilium and associated proteins [BR:omy03037]
 Primary cilia and associated proteins
  USH complex and associated proteins
   110535109
SSDB
Motif
Pfam: PDZ PDZ_6 PDZ_2 Cornifin USH1C_N HHD_RTEL1
Other DBs
NCBI-GeneID: 110535109
NCBI-ProteinID: XP_036792237
Ensembl: ENSOMYG00000029199
LinkDB
Position
11:complement(72763000..72842417)
AA seq 981 aa
MMNSDLEHVSLNSTTASNSGTGSGGRGLSANVRKLHNALNLLLTDFEREQFIHCLNVYHA
KRNVFDLVQTLKIILNTPNKRQLLPMLRLVIPRSDQLLFDQYTSEGLYLKTDHLPLNSVN
NPESFGGVGNTAVGEIREVTLRRSKSNEGLGFSIRGGSEHGVGIYVSLVEPGSFAENEGL
RVGDQIVTVNGMLFDRVSHMEAVKVLKGCKKLAMSVCSVGRIPGGYVTNNIYAWVDPHGR
SVSPPSDLEQQSTLGPQHSQRRTGHTQEKTVNLNLDDGLSLGLMIRGGAEYGLGIYITGV
DPGSAADHGALKVGDQLLEVNGRSFVAIPHDEAVRILKTCRHLLVRVRDVGRVPHARTVV
DQTKWISSPITPSPPPITESTASPAATRPSSARATPVLGKSFFMWVHSFIPSPHPSFYPS
NQSVCQGVGPLGFQVSLEEQAFLLLTDPERQTMGYYLREYQEGHIGLEPLTMALFELFNT
RAKLSLLSEVRSQVAPQELELYDGLVLHREREALKAWHGGIGSLHPVHPYSRCLHAEPSA
SHIHSNPATLCSAKKECSHGDIVQQDPGATTNVIPDVTLNEVQSTAESPPFFKPPPPPGP
GQTQPRHPRDREREQSKRFLSRHSQSGLVFTAPTRLHQECHHKHLKAFQSFSNHQTSNSP
SSELHHICPNPGHHNSSNPGHHNSSNPGHHNSSNPGHHNSSNPGHHNSSNPGHHTTPNPG
HHTTPNTGHHTTPNTGTGHSVYPSSGNDTSMNSLHHTCQSSLHISTTTSSDHHTPQTHHG
CSSSGHHSCPGSPHPKHSGPQNKDTFIKLPIFRSCSHEKPLSDSGQTLSEDSGVDIAEAR
GLSKDSNPWPTKNQASQATQGPHGAQGSAVLASKQQPGSPVPILTLVRVVKNANTLGIAI
EGGANTRQPLPRIVTVQKGGSAHSCGQLKVGQVILEVNGVSLRGREHRDAARIIAEAFKT
KEKDHIDFLVTEFNTALLQGL
NT seq 2946 nt   +upstreamnt  +downstreamnt
atgatgaacagtgatttggagcacgtttcactcaattcaacgacggccagcaactcaggg
actgggtcgggcggccgagggctgtcagccaacgttcggaagctgcacaacgcgctcaac
ttgctgctcactgacttcgagagagaacaattcatccactgcctcaatgtttaccacgct
aaacgcaacgtcttcgacttggttcaaactctcaaaataatcctcaacacgccgaacaaa
cgacaactcctccccatgttgcgtttggtcattccccgctcagatcagctgttgttcgac
cagtatacttccgagggcctgtaccttaaaacggatcatctaccactaaacagtgtcaac
aaccctgaaagctttggaggagtaggcaatactgctgttggagagatccgcgaagtgaca
ctgagacgcagcaagagcaatgagggcttagggttcagtatccggggaggttctgagcac
ggtgtgggaatctatgtgtcgctagtagaacccggatcttttgccgagaatgaaggactg
agggtcggggatcagatagtgactgttaacggcatgctgtttgacagagtctcacacatg
gaagcagtcaaggtcctgaaaggctgtaagaagctggccatgtcagtttgttcagtaggc
cggatccccggggggtatgtcaccaacaacatttatgcctgggtggatcctcatggccgc
agtgtgtcccctccctccgacctggagcagcaaagcaccctgggaccacaacacagccag
agacgtacaggacacacacaggagaagacagtaaacctgaacctggacgatggtctctct
ctgggcctgatgatcagaggaggggcggagtatggcctgggtatctacatcactggggta
gaccccggctcagctgcagaccacggggcactcaaggtgggcgaccagttgctggaggtg
aatgggcggagcttcgtggccatcccccatgacgaggcggtgaggatcctgaagacgtgt
cgtcacctgctggtgagggtgagggacgttggccgcgtgccccatgcccgcaccgtggtg
gaccagaccaaatggatcagcagccccatcacccctagcccaccgcccataacagagagc
accgccagcccagccgctacacggccatcttcagcgcgggctacacctgtattaggaaag
tcttttttcatgtgggttcattcattcattccctccccccacccctccttctatccctcc
aatcagtctgtgtgtcaaggtgtggggcccctgggtttccaggtgtctctggaggagcag
gccttcctgctgctgacagacccagagagacagaccatgggctactacctgcgggagtac
caggagggacacatcggcctggagcccctgaccatggccctgtttgagctcttcaatact
cgtgccaagttgtccctgctatctgaggtgcgtagtcaggtagctccccaggaactggag
ctgtatgatggcctggtgctgcaccgcgagagggaggctctgaaggcctggcacggagga
ataggatccctacaccctgtgcacccatacagccgctgtctacacgctgagccctcagcc
agccacatccactccaacccggccactctctgctctgccaagaaggagtgctcacatggt
gacattgtacagcaagatccaggggcaaccactaatgtcatacctgacgttacattgaat
gaagtgcagtcgacagctgagtctcctccgttcttcaagccgcctcctccccccggaccc
ggacagacccagcccagacatccgagggacagggagagggagcagtccaagcgcttctta
tccagacactcccaatctggcctggtctttactgcccccaccaggctgcaccaggaatgt
caccacaaacaccttaaagccttccaaagcttctccaaccaccaaacgtccaactcccct
agctctgagctccatcacatctgtcccaaccctggccatcataatagctccaaccctggc
catcataatagctccaaccctggccatcataacagctccaaccctggccatcataacagc
tccaaccctggccatcataacagctccaaccctggccatcatactacccccaaccctggc
catcataccacccccaacactggccatcataccacccccaacactggcactggccatagc
gtctatccaagctctggcaatgacacatccatgaactctcttcaccacacctgccaaagc
tccctccacatctccacaactacctcctccgaccaccacaccccccaaacacaccacggc
tgctccagctccggccaccattcctgccctggctcccctcatcccaagcactctggtcct
cagaacaaggacacattcatcaagcttcccatcttcagatcctgctcccatgagaagcct
ctgtcagacagtggtcagactctgagtgaggacagtggggtggacattgctgaggcacga
gggctcagtaaagacagcaatccttggccaactaagaaccaggccagccaggccacacaa
gggccccatggggcccaggggtctgcagtactggcatccaaacagcagcccggctctcca
gtgcccatacttactctggtacgtgtggtaaagaatgccaacactctgggcattgctata
gagggaggtgcaaacacacggcagccactgccacgcatcgtcaccgtacagaaggggggc
tcggcacacagttgtgggcagctgaaggtgggacaggtgattctggaggtgaacggggtc
tccctgaggggtagagagcaccgggacgctgctcgcatcatcgctgaggccttcaagacc
aaagagaaggaccacattgacttcctggttaccgagtttaacacagccctactgcaaggc
ctttag

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