Oncorhynchus mykiss (rainbow trout): 110535144
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Entry
110535144 CDS
T07259
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110535144 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110535144 (smarca2)
03036 Chromosome and associated proteins [BR:
omy03036
]
110535144 (smarca2)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110535144 (smarca2)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
110535144 (smarca2)
Chromatin remodeling factors
BAF complex
110535144 (smarca2)
PBAF complex
110535144 (smarca2)
GBAF(ncBAF) complex
110535144 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
HSA
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
110535144
NCBI-ProteinID:
XP_036792480
Ensembl:
ENSOMYG00000004868
LinkDB
All DBs
Position
11:complement(84501885..84719806)
Genome browser
AA seq
1617 aa
AA seq
DB search
MSTPTEHAGGMSQPHPGPSPCPGRSPGPGPSPSSGPPSGPPSLQGQGAGDYLQDTMLPMH
QPMEGVDEKGMGDETNYGQMKGVGMRALHSGMGPSQSPLDQHINQGYMPPQPSPLGVPEH
ASSPLSRGGPTPPMPPQMSPVPSGSMIPQMDPQSAMGPQGPLGRGCSSFSPVQLQQLRAQ
ILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQQQQPSTGSPYSRPPGMSSMSGPQSGP
GPTITMPGQNQTHGPKPWPEGQGGDTPSNPQKLLAPPPSGRPSPAPPQAPPPGPMSGPSI
THQPQGQQPSPVITLQQKQNRVTPIQKPQGLDPTEILQEREYRLQARIAHRIRELESLPG
ALPPDLRSKATVELKALRLLNFQRQLRQDVVQCMRRDTTLETALNSKAYKRSKRQTLREA
RMTEKLEKQQKMEQERKRRQKHQEYLNSILQHAKDFKDYHRSITAKMQKQNKAITTWHTN
TEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVYE
HKAAQAANMKKKKKKQKKKNIDESGEGMSGIGPDGEPIDESSQMSELPVKVIQTETGKVL
QGLDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEDEDEEEVPGVSSRPDSQSEEKKI
IDPNSDEFPEKVTKHIIESAKQDVDDEYTVPETELTIFQQSYYGVAHAIIERVDKQSSLL
INGMLKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII
VPLSTLSNWVYELDKWSPSVVKISYKGTPAMRRGLVAQLRSGKFNVLLTTYEYIIKDKQI
LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLL
PTIFKSCNTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP
EKVEYVIKCDMSAIQRVLYRHMQGRGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHP
YMFPHIEESFAEHLGFPNGVISGHELYRASGKFELLDRILPKLHVTNHRVLLFCQMTSLM
TIMEDYFAYRNFLYLRLDGTTKSEDRAALLKKFNEKGSQYFVFLLSTRAGGLGLNLQAAD
TVVIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI
QAGMFDQKSSSHERRAFLQAILETEEQNEVGHGGVGIKIKCSSLQEEEKSQVAMEEDEVP
DDETLNQMIARNEDEFELFMSMDLDRRREDARNPKRKPRLMEEDELPSWIVKDDAEVERL
TCEEEEEKIFGRGSRRRGDVDYSDALTEKQWLRAVEDGNLEEMEEEIRLKKSRKRRRRGE
KDGGREEGGEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYRDRSNRQLSEVFVQL
PSRKELPEYYELIRKPVDFKKIKERVRSHKFRSVSDLEKDVMLLCHNAQTFNLEGSQIYE
DSIVLQSVFKSARQRIVKEEESEEDSDDDDDDDDDEEESEAESNSVRVKIMLGKECGGSS
IGARHHNKDKGKKRLSRSKAKPVVSDDDSDEDQDDNFRRKRISLRRAEVKMSEEEEG
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctacggagcatgcgggtggtatgtcccagccccacccgggtccctctccg
tgcccaggccggtccccaggaccaggcccctcccctagctccggaccccccagcggaccc
cccagcctacaggggcagggggctggggactaccttcaggacaccatgctccccatgcac
cagccgatggagggcgttgatgagaaggggatgggagatgagacgaactatggccagatg
aagggagttgggatgagggcgctacacagcggaatgggcccttcacagagccctctggac
cagcacatcaaccaaggctacatgcccccacaaccctcccccctgggtgtcccagagcac
gcttccagccccctatccaggggcggccctacgcctcccatgccccctcagatgtccccc
gtcccgtcgggctccatgataccccagatggacccccagtcagccatgggtccacagggg
cctcttggtcgtggctgctcctccttcagccctgtccaattacagcaactccgggcccag
atcctggcctataagattctggggcggggccaaccgcttcctgaaaacctccagctggcg
gtccagggcaagaggagtctgcccaccatgcagcaacaacagcagcagcagccgagcact
ggcagcccctacagcaggcctcctggtatgtcatctatgtctggccctcagtcaggccct
ggtcccaccatcactatgccaggacaaaatcagacacacggacccaaaccctggcctgaa
ggccaaggtggtgatactcccagcaacccccagaagcttctagctccgccccccagtggt
agaccctcacctgccccaccccaggcccctcctcctggacccatgtccggcccctctatt
acccatcagccccagggacagcagccgtcgcccgtcatcacactgcaacagaaacagaac
cgcgttacgcccatccagaaaccacagggcctggaccccacagagatactgcaggagaga
gagtacaggctgcaggctcgtatcgctcaccggatccgggagctggagagtctacctgga
gctctgcctccggacctgaggagtaaagccacggtggaactcaaggctttgagacttctc
aacttccaacgacagctgcgtcaggatgtggtccagtgtatgcgtagagacaccaccctg
gagacagccctgaactccaaggcttacaagaggagcaagcgccagacgctgagggaggct
cgcatgacagagaaactggagaaacagcagaagatggaacaggagaggaaacgcagacag
aaacaccaggagtatctgaacagcatcctgcagcatgccaaggactttaaggactaccac
cgctctatcactgccaagatgcagaagcagaacaaggccatcaccacctggcacactaac
acagagagagaacagaagaaagagacagagaggatcgagaaggagaggatgaggagactc
atggcggaagatgaggagggctacaggaagctgattgaccagaagaaggacaagcgtctg
gcgtatctgctgcagcagactgacgagtacgtagctaacctcactgacctagtctacgaa
cacaaggctgcacaagcagccaacatgaagaagaagaagaagaagcagaagaagaagaat
attgatgagagcggggaagggatgagtggcatcgggcctgacggggagcccattgatgag
agcagtcagatgagtgagctgccagtcaaagtgatccagacagaaacagggaaggttctg
caggggctcgacgcccccaagtcctcacagttggaggcctggctagagatgaaccctgga
tatgaagttgccccaaggtcagacagtgaggagagcggctcagagtttgaggacgaggat
gaagaggaggtcccaggagtgtccagccggccagactctcagtctgaggagaagaagatc
atcgatcccaacagtgacgagttcccagagaaagtaaccaagcacatcatcgagtctgca
aagcaggatgttgatgatgagtacacggtgccagagactgaactgaccatcttccagcag
tcctactacggtgtggctcacgccatcattgagagggtcgacaaacagtcttcgctgctc
atcaacggcatgctcaaacactaccaggtgcagggtctggagtggatggtgtctctgtac
aacaataatctgaatggtatcctggctgatgagatggggctgggcaagaccatccagacc
atcgccctcattacatacctcatggaacacaagagactcaacggaccctacctcatcatc
gttccactatcgactctgtccaactgggtctatgagctggataaatggtctccgtccgtt
gtgaagatttcctacaaggggacccctgctatgagacgaggcctggtggctcagctccgc
agcgggaagttcaatgtcctcctcaccacctacgagtacataattaaggacaaacagatc
ctggccaagatccgttggaagtacatgattgtagatgagggtcaccgtatgaagaaccac
cattgtaagctgacccaggtgttgaatacccattacgtggccccacggcgcctcctcctg
acgggcacgccactgcagaacaagctccctgagctctgggccctgctcaacttcctgctg
ccgaccatcttcaagtcctgcaacactttcgagcagtggttcaatgccccctttgccatg
accggggagagggtggacttgaatgaggaagagacaatcctgattatccgccgtctccac
aaggtgctccgccccttcctgctcagacgactcaagaaggaggtggagtcccagcttcca
gagaaggtggagtatgtcatcaagtgtgatatgtcggccatccagagggttctgtaccgt
cacatgcagggcagaggaatcctcctcaccgatggatcagagaaagacaagaagggtaaa
ggaggagcgaagaccctgatgaacaccatcatgcagctgaagaagatctgcaaccacccc
tacatgttcccacacattgaggagtcctttgctgagcacttaggcttcccgaacggcgtt
ataagcggacacgagctgtaccgtgcatcagggaagtttgagctgctggaccggatcctt
cccaagctgcatgtcaccaaccacagagttctgctgttctgtcagatgacatcactcatg
accatcatggaggactactttgcttaccgcaatttcctctacttgcgcctcgacggcacc
accaagtctgaggaccgtgcggcgctgctgaagaagttcaatgagaaaggttcccagtac
tttgtgttcctactgagcaccagagccgggggactgggcctcaacctgcaggctgcggac
actgtggtcatctttgactctgactggaaccctcaccaggacctccaagcccaggacagg
gctcatcgtattggtcagaagaacgaggtgcgtgttctgcgtctgtgtacggtcaacagt
gtggaggagaagatcctagcggctgctaagtacaaactgaacgtggaccagaaggtgatt
caagccgggatgtttgaccagaagtcctccagccacgagaggagagcctttttacaggcc
atactggaaacagaagagcagaatgaggttggtcacggtggcgtgggaataaagattaaa
tgcagttccttgcaggaggaagagaaaagtcaggtggctatggaggaagacgaggtgcct
gatgatgagactctgaaccagatgatcgcccgtaatgaggatgagtttgagctgttcatg
agtatggacctggaccggcggcgggaggacgccaggaaccctaaaaggaagccacgtctg
atggaggaggatgagctgccatcttggatcgtcaaggatgacgcagaggtggagcggctc
acctgcgaggaagaggaggagaagatcttcggcagaggatcacgcaggagaggcgacgtt
gactacagcgacgccctgacagagaaacagtggctcagggcagtagaggatggtaacctg
gaggaaatggaggaagagatccgtctgaagaagtcgaggaagaggaggagacgaggggag
aaggacggggggagggaagagggaggagagaaggcaaagaagaggcgtggacgtccccct
gccgagaagctgtcccccaacccccccaaactcactaaacagatgaacgccatcatcgac
accgtcatcaactacagagacaggtctaacagacagctgtcagaggtgtttgtccagctg
ccgtccaggaaagagctgccagagtactacgagctgatcagaaaacctgttgacttcaag
aaaatcaaggagcgtgtgcggagccacaagttcaggagtgtgtctgacctggagaaggat
gtgatgctgctctgtcacaacgctcagacttttaacctggaggggtcacagatctatgag
gactccatcgtgctccagtctgtgtttaagagtgccagacagagaatcgtaaaggaggag
gagagtgaagaggacagcgatgatgacgatgatgatgatgatgatgaggaagagtcggag
gcagagtctaattcagtgagggtgaagataatgctaggtaaggagtgtggcggtagcagc
atcggagcccgtcaccataacaaggacaaaggcaagaagagactgagtcgctccaaggcc
aaacccgtcgtcagtgacgatgacagcgacgaagatcaggatgacaacttcaggaggaaa
agaatcagtctgaggagagcagaagtgaagatgagtgaagaagaggaaggctga
DBGET
integrated database retrieval system
