KEGG   Oncorhynchus mykiss (rainbow trout): 110535276
Entry
110535276         CDS       T07259                                 
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    110535276
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:omy03400]
    110535276
DNA repair and recombination proteins [BR:omy03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     110535276
SSDB
Motif
Pfam: DUF3337 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_DCAF12 ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD_LRWD1 WDR54 WD40_RFWD3 Beta-prop_Vps41 RAWUL Nucleoporin_N Tfb2_C
Other DBs
NCBI-GeneID: 110535276
NCBI-ProteinID: XP_021475850
Ensembl: ENSOMYG00000014541
LinkDB
Position
11:12176913..12191408
AA seq 698 aa
MEVTSRCHHVKMATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAG
RDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFC
MSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKD
SIYSLAMNQMGTVIVSGSTEKSECALLKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDG
TQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLR
NPELRMLICEEKAPVLKMELDRSADPPTALWVSTTKSTVNKWSLKGIHNFRASGDYDNDC
TTPLTPLCTQPEQVVKGGASIIQCHILNDKRHILTKDTNNNVAYWDILKACKGEDLGKME
FDEEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGADPKLNL
GGLLLQALLEYWPRTHVNPMDEETEMNHVNGEHESRIQKGNGYFHVPPHTPVIFGEAGGR
TLFRLLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKD
RLSASDMLQVRKVMEHVYEKIINLDNESQTGASGNNDKPSEQQQQQKEEEDVAVLAEEKI
ELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQKST
NT seq 2097 nt   +upstreamnt  +downstreamnt
atggaagtgacgtcaaggtgtcatcatgtaaagatggcgactcatcacaggcagaatgct
gctgggcggagaaaagtgcaggtatcctatgtgattagggatgaggtggagaagtacaac
cgcaatggggtgaacgccctgcagctcgacccggccttgaaccgcctcttcacagctggc
cgagactccatcattaggatatggagcgtcaaccagcacaagcaggacccgtacattgca
tcgatggaacaccacacggactgggtcaatgacatcgtcctctgttgcaatgggaagaca
ttgatatctgcttcctcagacaccacagtgaaagtctggaatgcgcataagggattctgc
atgtccacattgcgaacacacaaggactatgtcaaagccttagcctatgccaaggacaag
gagttggtggcctcagcggggctggacagacagatcttcctatgggacgtcaacacacta
acagcactgactgcctccaataacaccgtcaccacctcctcactgagtgggaacaaagac
tccatctacagtctggctatgaatcagatgggcaccgtcattgtgtcagggtccactgaa
aagagtgaatgtgcccttttaaaggtactgagagtttgggatcctcgaacctgtgccaaa
ctgatgaagttgaaaggccacactgacaacgtcaaatcattactgctaaacagggatggc
actcagtgtctctcgggcagctcagacgggaccatccggttgtggtcgctggggcagcag
cggtgcatcgccacctaccgggtgcacgatgagggcgtatgggccctacaggtcaacgag
gccttcacgcatgtctactctggtggccgtgaccgcaagatctactgcactgacctgagg
aacccagagctccgtatgctcatctgtgaggagaaggcccccgtcctcaagatggagctg
gaccgctcagctgacccccccacggccctctgggtctccaccaccaagtccaccgtcaac
aaatggtctctgaagggcattcacaatttccgagcatctggagattacgacaacgactgc
actactcccctgacgcctctctgcacacagcccgagcaggttgttaaaggcggagccagc
attattcagtgccacattctgaatgacaagagacatatactaaccaaagataccaacaac
aacgttgcatactgggatattttaaaggcgtgtaaaggggaagacctgggaaagatggag
tttgacgaagagattaaaaagaggtttaaaatggtgtatgtgccaaactggttctctgtg
gatcttaagactgggatgttgaccatcacgctggatgagagtgactgctttgctgcgtgg
gtgtcggccaaggatgcaggcttctccagtcctgatggggctgatcccaaattgaacctg
ggtggactgctgctgcaggccttactggagtattggccccggacacacgtcaaccctatg
gatgaagaaaccgagatgaaccatgtgaacggggagcatgagagcaggatacagaaaggt
aatggctacttccatgttccccctcacacgccagtcatctttggagaggcagggggaagg
accctgttcaggttgttgtgtcgagactcaggtggtgaaactgagtccatgttgctcaac
gagaccgtgccacagtgggtcatcgacattaccgtggataaaaatatgcccaaattcaac
aaaatcccattctacctccagcctcattcttcctctggtgcaaaaaccttaaagaaggac
cgtctgtcggccagcgacatgctccaggtgaggaaggtgatggaacacgtatatgagaag
atcataaacctggacaacgagtctcagacaggggcctcggggaacaacgacaagcccagc
gagcagcagcagcagcagaaggaggaggaggacgtggccgtgctggccgaggagaagatt
gagctgctctgtcaggatcaggtattggatcccaacatggacctgcggacggtcaagcat
tttatctggaagagtggcggagacctaacccttcactatcggcagaagtccacgtga

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