Oncorhynchus mykiss (rainbow trout): 110535417
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Entry
110535417 CDS
T07259
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04518
Integrin signaling
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110535417
04518 Integrin signaling
110535417
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110535417
09142 Cell motility
04820 Cytoskeleton in muscle cells
110535417
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110535417
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110535417
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110535417
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110535417
Hyaluronan
Extracellular matrix or blood plasma proteins
110535417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
Kunitz_BPTI
vWA_SIBA-E
Integrin_beta
Motif
Other DBs
NCBI-GeneID:
110535417
NCBI-ProteinID:
XP_036817690
LinkDB
All DBs
Position
2:complement(14155666..14187261)
Genome browser
AA seq
2726 aa
AA seq
DB search
MEGTQGLLAIFTIATCFLVNGAQKTVCKEEAVADIVFLVDGSWSIGSENFKQIRQFLYTL
VNSFEVAPDQVRIGLVQYSNTPRTEFLLNTFQDKQDILQYITNLRYMGGETNTGLGLDFL
LNELFVDRAGSRVNENVPQIGVVITDGESMDNVGLHALKLKKQGVTLYAIGIKEADEDQL
KEIATTPHNQHVYSVSDFAALQGISQSLIQVLCTTVDEAKRPISKVVQECLNATVADIVF
LVDGSTSISPTNFQEVRRFLHSFIEGLDIGADKVRIGLAQFSNEIQKQFHLGEHTDQRAL
LEQVDRLPQLGGGTATGKAITVLREEFFTKANGSRADQRVPQIAVVLTDGASADKVTLPA
KALRQQGVIVFAIGVGAANTNELKDIANRPHERFLVNIESFQALQTLSQGLLQTVCVSME
NQRMALIPKFSDIFFLVDSNMMQADFQLVRTLLMRLVNQLNPSTKTMRLGLAQFAQDTKV
EFLLNTHNTKEEYLAALRKFRLPLRPNRSRHLGDALEYARAHFFTTASGGRNEQGYRQFL
VTVTGGDSKDNVMKVARTIKSEGTTIVSIGLGESTLPELKLMATSPFFYQTTSITSVLKT
VFETEEVVTVTDDCSEASLADIVFIVDESSSNRTANFQLVRGFIHKIVDGLDIDFNRVRV
GIVLYSNKASAQVYLNSFQEKTNILQFIKILPYRRGLTYTGEALEYAREKMFIKERGSRK
EQGVQQVAIVITGKSQDNVTSHAAALRRAGVTVYAVGIKDADENELRQIASDPPNKHVLH
VDSFAKLKTLEKSLKKSVCYNILKKAVKDNARTYTAKQSCLQTDEADMFFLIDHSGSIEY
PDFADMKTFINKFINTFHIGPHHVRVGVVKFSDTPALEFDLTTYPDKPSVEKAVDGIIQL
GGGTKTGLALNSMGPHFDRAKATRSHKVREYLIVITDGESEDNVKDQAAKLRAQGITIYA
IGVNLANDTQLLEIAGSQEKKFFVNNFDALKPIKNDIITDICSPDICNDMKGDVLFLIDS
SGSINNPDFQKMKVFMQSIINKSDIGLDKVHVGIIQFSTSQQVIFPLNKHNDKEGMLQDL
QTMQQIGGGTHTGRALSYTSQFFDPPKGGRTNVKQFLIVVTDGEAQDEVMSPAKKLQDKG
VIIYAIGVVNANNTQLLEISGAQERVYSERDFDALKALDSQLALAICDPERECVRTEIAD
IIFLVDGSTSISSDNFDIMKNFMMSVVNETSVGEKQTRYGLIVFSDNPESKFTLNEYKSK
RDVNSAITKLREPSGDTYTGKALKYSLGYFGAQYGGRKALNVPQWLMVITDGEATDPYSL
AGPAKELRDNGIIVYSIGVVGANKQELELMAGDTNKVFFVDDFHKLDTLHKNISFEFCQT
SKPVCEKTQGDLVLLIDSSGSISTTDFTIMKKFATDLVSSFNIAEQSFRVGVAQFSSDPK
KEFFLNEYYTEAEVNNQINNMMQIRYTTNIGKALNYVRKEYFQPARGSRINAKVSQNLVV
ITDGRSDDDVVDAAEKLKAMNIEVFAIGIGKDHKPVELGQITLNPERVFSVQDFASLDKI
KKKVVDTICSSKVPDTQAGCTIDIAMGFDITRRATAQGLFDGQAQLQAFLPQIIRYVSNL
KGLCCVAGDGSIETNIGFRVVEQDGKVLYDYNFEKYDEKIVEKVMALQTTQTTYFNSFLL
RSFSDKFQKSNAGVKVLVIFSDGLDDDVVKLEQESELLRTKGINALLTVALEGVQNANLL
QMVEFGRGFGYKQPLNIGMHNLGNTLLTQIDTVAERECCNVMCKCTGHEGIRGNRGRPGT
KSQPGLKGHPGFPGEEGGIGERGPPGPTGPQGLQGCSGRRGLKGSRAYRGDRGDDGDHGL
DGVDGEQGLIGTAGAAGERGNPGRPGNSGLIGEPGVKGQRGLRGDPGDSGVDSIVAGPKG
GRGNPGLPGDPGEEGSRAESGIVGNPGPQGRRGLPGPNGTPGDPGVVGLQGIPGPSGPQG
IRGDLGQPGPRGLQGLPGPQGTPGTMGGKGSTGRRGMNGQKGQPGDLGVNGALGTLGPRG
MPGLDGSDGHGPPGPQGMKGEPGFHGYPGLQGESGDFGVKGGPGPKGNRGRGGNSGRSGE
SGDPGSIGPPGHTGSRGRPGERAMSECQLTTYIRDNCACSQGQAACPAYPTELVFALDMS
QDVEPATFERMHSALLSILDDVAIAESNCPTGARVAVVSYSANTKYLIRFQDYQRKPELL
EAIQNIALERTSNQRHLGEAMRFVGRHVFKRTRKALTMRKVAVFFTNGPSVDSAAIVTAA
MEFKALNIAPAVIALRNSPDVQRAFEADDTGSFILVRLVDRSQDQNAVLTRIKNCVICYD
HCKPAQGCDFTDAQRPLVVDMDLTLVVDGSREIRADQYAGVQELLGSVVKQVAWSPKPSV
ADGRARVALLQTSGSLLPQTSQAVKVEFDLQKYHNHIGLQRHLRSMQQQGGVSSLGQTLE
YALSKVFLKATRPRKSRVVLAVVGAETAHWDQAKLAYISQKAKCQGVSLFVIAVGDHYNS
TQVEELASTPSEQHLLHLWHVKEWERGYAQRFFRAFLRVLSKGGNSYPPAHLKLKCDLML
GQEHGQGQGQAEWDVWKEEEEYTDEEEFLEHTGVFPTQIALDQVDTIHAFSRGDGATSPP
RPQPNSNDHTTLLRTEESTVLNQDACFFKQDKGGCENYTLKWYFDTTQSECSRFWYGGCG
GNANRFETQETCEGLCLRRNSTHVKP
NT seq
8181 nt
NT seq
+upstream
nt +downstream
nt
atggaggggacacagggcctcctggccatcttcaccatagcaacatgttttctggttaac
ggagcacaaaaaacagtctgcaaggaagaggccgtggccgacatcgtcttcctagtggat
ggttcatggagcatcggctcagagaacttcaaacagattcggcagttcttgtacacgctg
gttaacagctttgaagtggcccccgaccaggtgcgcatcggtttggtccagtacagcaac
acaccacgcactgagttcctcctcaacaccttccaggacaaacaggacatcctgcagtac
attacaaacctgcgttatatgggtggtgaaaccaacacgggcctgggcctggacttcctg
ctgaacgagctctttgttgaccgcgcagggagccgggtgaatgagaacgtgccccagatc
ggtgtggtgatcactgacggtgaatcaatggacaatgtggggctgcatgcccttaagctg
aagaagcagggtgtcacgctgtacgccatcgggatcaaagaagcagacgaagatcagctg
aaggagattgccactacacctcacaaccagcatgtgtacagcgtgtcagactttgctgcg
ctgcaggggatctcccagagcctcatccaggtgctatgtactaccgtagatgaggcaaag
agaccaatatccaaagtggtacaagagtgcctcaacgccacagtggctgacattgtgttc
cttgtggatggctccaccagcatcagccctacaaacttccaggaggttcggaggtttctc
cacagcttcatcgagggtctggatattggagcggacaaggttcgcataggactggcccag
ttcagtaatgagatccagaagcaattccatttgggggaacatacggaccaaagggcccta
ctggagcaagtggacaggcttccacagctcgggggaggcacagccaccggcaaagccatt
actgtccttcgggaagagtttttcaccaaggcaaacggtagccgcgctgatcagagggtg
cctcagattgctgtggtgctcaccgacggggcgtctgcggacaaggtaacgctgccagcc
aaggcgctaaggcagcaaggggtcattgtgtttgctattggagttggggcagccaacacc
aacgagctgaaggatatcgctaacaggccccatgagcgtttcctggtcaacatagaaagt
ttccaggccctacaaacactttctcagggtctgttgcagactgtctgtgtctccatggag
aaccagaggatggctctaatcccaaagttctctgatatcttcttcctggtggacagcaat
atgatgcaggcagacttccagctggtcagaacccttctgatgcgactggtcaaccaactc
aacccgagcactaaaacgatgcgcctgggtctggcccagtttgcccaggacaccaaggtg
gagttcttactgaacacccacaacaccaaggaagagtacttggcagctcttaggaaattc
aggctgccgctgcgtcccaacaggtctcgtcacctgggcgatgccctggaatacgcccgt
gcacacttcttcactacagcgtctggtggccgtaatgaacaaggctaccggcagtttcta
gtcacagtgacagggggggattcgaaggataacgtgatgaaggtggcacgtactatcaaa
tctgaagggacaaccattgtgtctatcgggttgggtgaatctacacttccagagctaaag
ttaatggccacctcgccattcttttaccagactacatccatcacctctgtgctaaagact
gtctttgagactgaagaggtggtcactgtgactgacgattgcagtgaagcttcactggct
gacattgtgtttatagttgatgagtcttcgagcaatagaactgcaaacttccagctggtt
cgtggattcatccacaagatagtagacggcctagatatagacttcaacagggtgagggtg
ggcatcgtcctctatagcaacaaggcctcggcccaggtctacctcaactccttccaagaa
aaaacaaatatccttcagttcatcaagatcctgccctaccgtcgcggtctcacatacact
ggcgaggccctggagtatgccagggagaagatgtttatcaaggagaggggcagccggaaa
gaacagggggtgcagcaggtggcgatagtcatcaccggaaagtcccaggacaacgtaact
tctcatgccgctgcactgcgcagagctggcgtcactgtctatgcagtggggatcaaggat
gctgacgagaacgagctgagacagatcgcttcagatccccctaacaagcacgtattgcat
gtggacagctttgccaagctcaagaccctggagaagagcctgaagaagagtgtgtgctac
aacatccttaaaaaagcagtcaaagacaacgcaaggacatacactgccaagcaaagctgt
ttgcagacagatgaagcagacatgttcttcctgatcgaccactcagggagtattgaatat
ccagactttgctgacatgaagacattcattaacaaattcataaacacattccacatcgga
ccgcatcatgtccgcgtgggtgtggtaaagttctctgatacaccagctcttgagtttgat
ctgacaacctaccctgacaaaccttcagtggagaaagcagtggatggtatcatccaactt
ggaggcgggacaaagaccggattagcgctgaactctatgggtccgcactttgatcgggct
aaggccacccgaagtcacaaagttcgcgagtacctcattgtcatcacagacggagagtct
gaagacaacgtgaaggatcaagcagcaaagctgagggcgcagggcatcaccatatatgcc
attggggtgaatctagctaacgatacacagctgctggagattgctggcagccaagagaag
aagttctttgtcaacaactttgacgctctgaaaccaataaaaaatgacatcatcacagat
atctgctcccctgatatttgcaacgacatgaagggggacgtcctcttcttgattgacagc
tcaggtagcattaacaacccagacttccagaagatgaaggtcttcatgcaatccatcatc
aacaaatctgacataggcctggataaagtgcacgtgggcatcatacagttcagcaccagc
caacaggtgatcttccctctcaacaagcataacgataaggaaggcatgttgcaggattta
caaacgatgcaacagataggcgggggcacacacaccggcagagccctgtcctacacctca
cagttctttgacccaccgaaaggagggcgcactaacgtgaagcagttcctgattgtcgta
accgatggtgaggcgcaggatgaggtcatgtctcctgccaagaaacttcaagacaagggt
gtgatcatctacgctattggggtggtcaatgccaacaatacacaattactggagatcagt
ggcgcacaggagagggtctactccgagagggactttgatgcactcaaggctttggatagc
caactggcattggcaatctgtgatccggagagagagtgtgtgaggacggagatcgcagac
atcattttcttggtggacggctccaccagcatcagctcagataattttgacataatgaaa
aacttcatgatgtccgtggtcaatgaaacctctgttggggagaagcagacacgctatggt
ctgattgtcttttcagacaaccccgagtctaaattcacactcaacgaatacaaatctaag
cgagacgtcaatagtgccatcacaaagcttagagagcccagtggagacacttacactgga
aaggcactcaagtattccttgggttattttggtgcacagtacggcgggcgaaaggcccta
aatgttccccagtggttgatggtgatcacagatggtgaggctactgacccctatagccta
gctgggccagccaaggagctacgggacaatgggatcatagtctatagcatcggagtggtt
ggagcaaataagcaagagcttgagctcatggcaggggacacgaataaggttttctttgtg
gatgacttccataaactagacacactgcacaaaaatatttcctttgaattctgccaaacc
agcaaaccagtctgtgaaaaaacgcagggggatctggtcctgttaattgacagctcaggg
agcatcagcaccaccgacttcactatcatgaagaagtttgccacagaccttgtttccagc
ttcaacattgcagagcagtccttccgggtgggagtcgcccagttcagcagtgatcctaaa
aaggagttcttcttgaatgagtattacacagaagcagaggtgaacaaccagataaacaat
atgatgcagattaggtacacaacgaacatcggaaaggccctgaactacgtccgtaaagag
tacttccaaccagctagagggagccgtatcaatgccaaggtctctcagaacctggttgta
atcactgacggacgttcagatgatgatgttgttgatgcagcagagaagctcaaggccatg
aacattgaggtgtttgccatcggtatcgggaaagaccacaaacctgttgagcttgggcaa
atcactctcaacccagaaagggtcttctctgtgcaggactttgccagcctggacaagatc
aagaagaaggtggtggatactatatgctcctccaaggtaccagacactcaagcgggctgc
accatagacatcgccatggggttcgatattacacgcagggccaccgcccaggggctcttc
gatggccaagcccagctacaggccttcctgccacagatcatccgctatgtgtccaacctg
aagggcctgtgctgcgtggcgggagatggttccattgagactaacattggcttccgcgtg
gtggagcaggacggaaaggttctctacgactacaacttcgagaagtacgacgagaaaatt
gtggagaaggttatggccctgcagaccacccagacaacatacttcaactccttcctcctg
cgctccttcagtgataagttccagaaatctaacgctggcgtgaaggtgctggtgatcttc
tcagacggactcgatgatgacgtggtgaaactggagcaagagtcggaacttctccgcact
aaaggtatcaacgccctgcttacagtcgccctagaaggtgtccaaaatgccaaccttctt
cagatggtggagtttgggcgaggatttggctacaagcagccgctcaacattggcatgcac
aatttgggaaacaccctgttgacacaaatagacacagtggctgagagggagtgctgcaat
gtgatgtgtaagtgcaccggacatgagggtatccgtggcaacagaggacgcccagggaca
aagagtcagccaggactgaaaggacaccctggcttccctggcgaggaggggggaattggc
gagagaggtccaccaggtcccactggcccacagggactacagggctgttctgggaggaga
ggcctcaagggctcaagagcctacagaggggacaggggtgatgacggagaccatggcctt
gatggggttgatggtgaacagggtctgattggaacagctggagctgcaggagagagagga
aacccaggaagaccaggcaacagcggcctcataggagagccaggagtgaaggggcagcgt
ggacttagaggtgaccctggagactctggagtggacagcattgtcgcgggtcccaaagga
ggaaggggaaacccaggactaccgggagacccaggagaagagggcagtcgagcagaaagt
ggaatcgtcggaaacccaggtcctcaaggaagaagaggtctccctggtccaaatggaaca
ccaggggatccaggagttgtaggcctccaaggaattcctggcccttctggaccacagggt
ataagaggagacttgggccagcctggacccaggggcctgcagggtttacctggacctcag
ggcacacctggaactatgggtggcaaaggttcaacaggaagacgagggatgaatggacag
aagggccaacctggggacctcggggtcaacggagcccttggaacacttgggccaagaggg
atgccgggtcttgatggcagtgacggccatgggcctcccggaccccagggaatgaaggga
gagcctggtttccatggttaccctggattacagggtgaaagtggtgattttggagtcaaa
ggaggtccaggccccaaaggaaaccgaggcagaggggggaactcgggcagatcgggtgag
tcaggagatcccggatccattggaccaccgggacacactggctctagaggcagaccagga
gagagagccatgtctgaatgccagctgaccacctatatccgtgataactgtgcatgctct
caaggccaggcagcgtgcccagcctaccccacagagctggtctttgctctggatatgtca
caggatgtggagcctgccacgtttgagaggatgcactccgctctcctctccatattggat
gacgttgccatcgccgagagcaactgcccgacgggtgcacgtgttgccgtggtatcctat
agtgccaacaccaagtacctgatccgattccaggactaccaacgcaagccggagttgttg
gaggccatccaaaacattgcactggaacgaacgtccaaccagcgccatcttggggaggcc
atgcgctttgtggggcgccatgtcttcaagcgaacccgtaaagcgttgacgatgaggaag
gtggcagtgttcttcaccaacgggccctctgtggacagcgctgccatcgtcacggccgcc
atggagttcaaggccttgaacatcgctcctgctgtcatcgcactgaggaactcccccgat
gttcaacgggcttttgaggctgatgacacgggcagcttcatccttgttcggctggtggat
aggtcacaggaccaaaatgctgtgctgacaagaataaaaaattgcgtcatctgctacgac
cactgtaaaccagcccaggggtgtgattttactgacgctcagcggcccctggtggtggat
atggacctgaccctggtggtggacggttcaagggagatccgggccgatcagtacgctggc
gtccaggagcttctgggctcagtggtgaagcaggtagcctggagccccaaacccagcgtg
gctgacggccgggccagagtggcccttctccagaccagtggttctctgctcccccagact
tcccaggccgtcaaggtagagtttgacctgcagaagtaccacaaccacattggtctacag
agacacctgaggagcatgcagcagcagggaggagtgtcgtctctggggcagaccctggag
tacgctctgagcaaggtgttcctcaaggccaccaggcccaggaagagtagagtggtgctg
gctgtggtgggggccgagacagcccactgggaccaggccaagctggcctacatttcccag
aaggccaagtgtcagggcgtttccctgtttgtgatcgcggtgggcgaccattacaacagc
acccaggtggaggagttggcgagcacgccgtcagagcagcacctgctccatctgtggcac
gtgaaggagtgggagagaggctacgcacagcgcttcttcagagccttcctcagggtcctc
agtaagggagggaacagctaccctcctgcccatctcaaactcaagtgtgatctgatgctg
ggacaggaacacggacagggacaaggacaggcagagtgggatgtgtggaaagaggaagag
gagtacacagatgaggaggagttcctggagcacactggtgtatttccgactcagatagct
cttgaccaggttgacactatacatgccttctccaggggagatggagccacttcacccccc
cggccacagccaaactctaatgatcacacaaccctcctgaggacagaggaaagtacagtt
cttaaccaggatgcatgtttcttcaaacaggacaagggaggttgtgagaactacactctg
aagtggtactttgacacgacacagagcgagtgctcccgtttctggtatggcggctgtggc
ggcaacgctaaccgtttcgagacgcaggagacttgtgaaggcctctgtctgaggaggaac
tccacacatgtaaaaccctga
DBGET
integrated database retrieval system
