Oncorhynchus mykiss (rainbow trout): 110535542
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Entry
110535542 CDS
T07259
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04144
Endocytosis
omy04517
IgSF CAM signaling
omy04520
Adherens junction
omy04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
110535542
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110535542
09144 Cellular community - eukaryotes
04520 Adherens junction
110535542
04530 Tight junction
110535542
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
omy01009
]
110535542
Protein phosphatases and associated proteins [BR:
omy01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110535542
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
Par3_HAL_N_term
Motif
Other DBs
NCBI-GeneID:
110535542
NCBI-ProteinID:
XP_036791132
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All DBs
Position
11:25858845..26400935
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AA seq
1465 aa
AA seq
DB search
MAQCHNRGRVSEMYPSACISTSSLVMCTQSFCPAMWNLREVVKQGVSTGLCQCSDPDYWL
QVHRLEHGDGGILDLDDTLCDVADDKDRLVAVYEEQDPHHGGDGTSASSTGTQSPDPFTA
VAELNSSNMSAFQPYQTSSEIEVTPSALRSNMPLHVRRSSDPSLAGLPLGDPHTAPEEPS
RKNPTRWSTTAGFRKHNHHHSHSHSQNTGTNSLERKDVDAYRSLPRDSAVWATQFQRETA
RSSLSANHPMVDRWLDRQDQEEEEEEERVKQEERNGRIEPVGRADSCVEHSPTLSLNDML
KLVEVSNVGGPLGIHVVPFSATDRRTLGLLVKRLERGGKAEQEGLFQENDCVVKINNGDL
RNIRFEQAQNMFRQAMRSPVILFHVVPASMKSQYEQLSQEELSPPCPRGERGNRGSFTSS
QASDPQAPQPGERGSLVVHGGVGLDHNPQRMSSRSRPHPIPIPNIKHQNHGPLPQRVPDQ
RFSTSLPHSGSNNVSSAPSPSLQRKVSANPTAGYLKKTGRRLNIQLKKGPEGLGFSITSR
DVPIGGSAPIYVKNILARGAAIQDGRLKAGDQLQEVNGVDLNGRSQEEVVALLRITPMGG
TVSLLVLRQEDSYLPREVKSEEEDLVLTPDGTREFLTFEIPLSDSGSAGLGVSVKGNRSK
ENHADLGIFVKSIINGGAACKDGRLRVNDQLIAVNGESLLGTPNQDAMEMLRLSMSTEGN
KRGMIQLIVARRVAKSNEEVPGSLRVEEQPLTDPLDDHERHISHSMFGTRESMDDQPSMP
PRNVMMGPRMMGNYQLSPTVNMPQDDTVMIEDDRPPVIPAHMSDQSSSSSHDDMGFAADN
PVTWAQDVPSQNECSLSPDTEDPEDSFQREGFGRQSMSEKRTKQFGDNANQLEIIKTRKS
KSMDLVSDEFNPHLTPSTENMEGSSTGETIGPSLGLKKSSSLESLQTAVAEVTLNGEINL
HRPRPRIIRGRGCNESFRAAIDKSYDKPGVIVTAMEECDLKGMETLEEDTEGSSRSGRDS
ISTATDLTLPPGNSVTMERQVNGNDDKKRVKSVRDKKKPERDKEKEKEKEREKNKAKKGL
LLKGLGDMFRFGKHRNGDKMERKGSSKSKMEDTQASEEEMLRMKLEQERIQAKTREFRER
QASVAREREYAEILDINPNLNCTFSSNEDEEHPYAGIGSLDGSSEDSRQEPHQGPQPPQD
SGPDQPDLEALYAQVNKPRNGHPPSADSNRLAPSNHDRIRRLRVEFQQARGEEDPDDRRR
TYSFEQPWANSETYTLTGHQSVSVESQVQRPRQDKRRDSFTQAQRQYSSLPRQPRKTPST
VSQESCDKAFPPGEVFQTAKENPRYSSYQGSRNGYLHSGASGFNARVLLETQELLRQEQR
RREQSEAKMRLPPPQEGVPVTNTGYDDIHPAPTPTLPQDPVLTQAPILVTATPKGPYRQD
VPPSPSQLARLNRLQGSEKGHPFYS
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atggcccagtgccacaacagagggagagtgagcgagatgtatccttcagcttgtatttcc
accagttcactggttatgtgtacccaatcgttttgcccagcaatgtggaatttgcgggaa
gtagtcaagcaaggtgtttctaccgggctttgccaatgttcggatcctgactactggcta
caggtgcacaggttggagcatggggacggaggcatactggatctggacgacacactgtgc
gatgtggccgatgacaaagacaggctggtggcagtgtatgaggagcaggaccctcaccat
ggaggtgatggcaccagtgccagctcaacgggcacacagagccctgaccccttcactgcc
gtcgcagagctcaactccagcaacatgtccgccttccagccctaccagaccagcagcgag
atagaggttaccccctccgccctgcgcagcaacatgcctctccatgttcggcgcagtagc
gacccctctctggcgggccttcccctgggtgacccacatacagcaccggaggaaccatcc
cgtaagaaccccacacgatggtccaccacggcaggcttccgcaagcacaaccaccaccac
agccacagccacagccaaaacactgggaccaacagcctggaacgcaaggatgtagatgcg
taccggagtctcccacgtgattcagcagtttgggccacccagttccagagagagactgcc
cgctcctcactcagcgccaaccaccccatggtggaccgctggctggacagacaggatcag
gaggaggaggaggaagaggagagggtgaagcaggaagagaggaatgggagaatagagccg
gtggggagagccgactcctgtgtggaacactccccaacgttatctctgaatgacatgcta
aagctggtagaggtgtccaatgtcggcgggcctctggggatccacgttgtgcctttcagt
gccacggacagaaggacccttgggttgttagtgaagcgtctggagcgcggcggcaaggcg
gagcaggaaggtctgttccaggagaacgactgtgtcgtcaagattaataacggggatctg
aggaacatccgatttgaacaagcccagaacatgttcaggcaggccatgcgttctcctgtc
attctgttccatgtggtcccagcctccatgaagagccagtatgagcagctctcccaggag
gagcttagccccccatgtccgaggggggagaggggtaaccggggaagcttcacctccagc
caggcctcggacccccaggccccgcagcccggggaaaggggtagtctggtggtccacggg
ggggtggggttggaccacaacccacagaggatgtcctccagatcaagaccacaccccatt
cccatccccaacatcaaacaccagaaccatggtcctctaccacagcgtgtaccagaccag
cgcttctccacctcgctacctcacagcggaagcaacaacgtctcctcggccccctctcca
tccctgcagaggaaagttagtgccaaccctactgcaggctacttaaagaaaaccggccgg
agactgaacatccagctgaagaaaggtcctgagggtcttggattcagcatcacatcacgt
gacgtccccataggaggctccgcccccatctatgtcaagaacatcctggctcggggtgct
gctatccaagatggccgcctgaaggctggcgaccagctgcaagaggtgaatggggtagac
ctgaatgggaggagtcaggaggaggtggtagctctactcaggatcacccccatgggagga
acagtcagtctgctagtcctacgccaagaggactcctatctacctagagaagtgaagtca
gaagaagaggacctggtgttgaccccagatggtaccagggagttcctgacctttgagatc
cctctgagtgactcggggtcggcaggtctgggggtcagcgtcaagggaaaccgctccaag
gagaaccacgccgacctgggcatctttgtcaagtccatcatcaacggaggggccgcctgc
aaggatggccgactgagagtcaacgaccagctgattgccgtcaatggcgagtcgttgcta
gggacacccaaccaggatgccatggaaatgcttcgcctgtccatgtcgacggagggcaac
aaacgagggatgatccaactcatcgttgccaggagggttgccaagagcaacgaggaggtt
ccaggaagcttgcgggtggaggagcagcctctgacagaccctctggacgaccatgagcgc
cacatctcccactccatgttcgggaccagagagtccatggacgaccagccctccatgccg
ccacgcaatgtcatgatgggaccgcgcatgatgggtaactaccagctgtctccgactgtg
aacatgccccaggacgacaccgtcatgatcgaagatgataggccacctgtgatccccgcc
cacatgtctgaccaatcatcctccagctcccacgatgacatgggctttgctgcagataac
ccagtgacttgggctcaggacgtgccaagccaaaatgagtgctccctcagtccggacaca
gaagacccagaagattcctttcagagggaggggtttggacgccagagcatgtcagagaaa
cgcaccaaacagtttggcgacaatgccaatcagcttgagatcatcaagacgcgcaagtcc
aagagcatggacctagtatcagacgagtttaacccccacctcacccccagcacagaaaac
atggaaggctcttcgacaggagaaacaattggtccctctctgggcctgaagaagtccagc
tccctggagagcctccagactgccgttgctgaggttacactcaacggggaaattaacctc
cacaggccacgcccacgaatcatcagggggcggggctgcaacgagagcttccgggcagcc
attgacaaatcgtacgacaagccaggagtaatcgttactgctatggaagagtgtgacctg
aagggaatggagacattggaggaggacaccgaggggagttctcggtcaggccgggactcc
atatctacggccactgacctgaccctgccacccggcaattctgtaaccatggagagacag
gtgaatggcaacgacgataaaaagagggtgaagagcgtgagggacaagaagaagcctgag
agagataaagagaaggagaaagaaaaagagagagaaaaaaacaaagccaagaaagggttg
ctgctgaagggcctgggagatatgttcaggtttgggaagcaccgcaatggagacaagatg
gagcgtaaggggtcgagtaaatctaagatggaggacacacaggcgtctgaggaggagatg
ctacggatgaaactggagcaggagaggatccaggcgaagacgagggagttccgtgaacgt
caagcgtcggtggcaagggagagggagtacgctgagatcctggacatcaaccccaacctg
aactgcaccttcagctccaatgaggacgaggaacacccctacgcaggcatcggctccctg
gacgggtcatccgaagacagcagacaggagccccaccaagggccccagcccccccaggac
agcggtccagaccagcctgacctggaagccctctatgctcaggtcaacaagcctcgcaac
ggacaccctccctcagctgacagcaaccgactggcgccaagtaaccatgaccggatacgg
cgtctgagggttgagttccagcaggccagaggagaggaggaccctgatgaccgacggcgc
acatacagcttcgagcagccctgggctaactcggagacctataccctgaccggacaccaa
tctgtgtctgtggagtcacaggtgcagagaccgagacaagacaagagacgagactcattt
acacaggcccaaagacagtacagttccctgccacggcaacctcgtaagacccccagcaca
gtgtcccaggagtcgtgtgacaaagcgttcccgccgggcgaggtcttccagacggccaag
gagaacccccgctactccagctaccagggctccaggaatggctacctgcacagcggggcc
agtggcttcaacgcccgcgtcctgctggagacccaggagctgctgaggcaggagcagaga
cgcagggagcaatctgaggccaagatgaggctaccgccaccacaggagggggtccctgtc
accaacaccggctacgatgacattcacccagccccgactccaactcttccccaggatcca
gtcctgacccaggccccgatccttgtcacagccacacccaagggcccgtaccgccaggat
gtgcccccctctccatctcagctggccaggctcaacaggctgcagggctcagagaaagga
catccattttactcctga
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