Oncorhynchus mykiss (rainbow trout): 110535636
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Entry
110535636 CDS
T07259
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04140
Autophagy - animal
omy04148
Efferocytosis
omy05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110535636
04148 Efferocytosis
110535636
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
110535636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110535636
Membrane trafficking [BR:
omy04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110535636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_Prp19
zf_RING_Vps8_fungal
Beta-prop_HPS5
Vps39_1
TPR_7
Beta-prop_EML_2
zf_RING_Vps8
Beta-prop_RIG_2nd
WD40_WDHD1_1st
TPR_GEMI5
TPR_PEP5_VPS11
Helicase_PWI
Beta-prop_IFT140_2nd
zf-C3H2C3
zf-rbx1
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
110535636
NCBI-ProteinID:
XP_021476424
Ensembl:
ENSOMYG00000038046
LinkDB
All DBs
Position
11:complement(36290894..36323530)
Genome browser
AA seq
853 aa
AA seq
DB search
MAEVEKGRKPSEESTDDSEEEDSEEEPKLKYERLANGVTEILQKDAASCMTVHDKFLALG
THFGKVFLLDIQGNLTQKFEISPVKINQISLDESGEHMGICSEDGKVQVFGLYTREGFHE
NFDCPVKVVALHPRFSSSNYKQFVTGGNKLLLYEKNWLNRWKTSTLHEGEGTITNVQWRA
NLIAWANNMGVKIYDISTKQRITNVLRDNVSLRPDMYPCSLCWKDNSTLIIGWGSSIKIC
VVKERGHTELRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYFVKENSDHMEEEFRAR
PCLDIIQPLPEGYEEISSDALTVRNFQENECRDYRLEHSEGESLYYIISPKDIVVAKERD
QDDHIDWLLDKKKYEEALMAAEISFKNIKRHEVQKIGMAYINHLVEKGDYDTAARKCQKV
LGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKSDYEGFATLIR
EWPGELYNNMTIVQAVTDHLKKDPMNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVYQ
LIHKHDLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKILIDRVVEELRDRPELLHIYLHKL
FKRDHHKGQRYHERQIGLYAEYDRPNLLPFLRDSIHCPLEKALEICQERNFVEETVFLLS
RMGNCRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQKMHRTQMR
GVRVDEENICESCHASILPSDMAQNFSVVVFHCRHMFHKECLPSPGTIPGVQFCNICSAK
RRGPGSGILEMKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagtagagaagggaagaaaaccaagtgaagaatccacagatgactctgaggaa
gaggacagcgaggaggagcctaagctgaagtatgagcgactggccaatggggtgactgag
attctccaaaaggatgctgccagctgtatgactgtccatgataagttccttgcactgggc
actcactttgggaaggttttccttctggacatccaaggaaatctgactcagaagtttgaa
attagtccagtgaagatcaaccagatcagtctggatgagagtggagagcatatggggatc
tgctctgaggacggcaaggttcaagtgtttggactctacacgagggagggcttccatgag
aactttgactgtcctgtcaaagtggtggcgttacaccctcggttcagcagttcaaactac
aaacaatttgtcaccggaggcaacaagctgctgctgtacgagaagaactggctgaaccgc
tggaagacgtccactctgcacgagggggagggcaccatcactaacgtccaatggagggcc
aatctcatcgcctgggccaacaatatgggtgtgaagatttatgacatcagcaccaaacag
cgaatcaccaacgtcctgcgggataacgtcagcctgcggcctgatatgtacccctgcagt
ctgtgctggaaagacaactccaccctcatcatcggttggggctcctctattaagatctgt
gttgtgaaggagaggggccacacagagttgagagaccttcctagccgttatgtggaaatt
gtgtctgcgtttgaaacggagttcttcatcagtggcctggcgcctctagcagaccagctg
gtcaccctgtactttgtgaaggagaactctgatcacatggaggaggagttccgagcgcgg
ccttgtctggacatcatccagcctcttccagagggctatgaggaaatctcatcagacgcc
ctgaccgtccgcaatttccaggagaacgagtgtcgagactaccgactggaacattccgag
ggagaatccctctactacatcatcagccctaaagacattgtggtggccaaagagagagac
caagatgaccacattgactggctgctggacaagaagaagtatgaggaagctctgatggct
gccgagatcagcttcaagaacattaaacgccatgaagtccagaaaattgggatggcctac
atcaatcacctggtggagaaaggtgactatgacaccgctgccaggaagtgtcagaaggtg
ctgggaaaaaacatggaactctgggagaatgaggtgtacaggtttaaaaccattgggcag
ttgaaggccatcagtcagtacttgcctagaggggacctgcgtctcagacctgccatctat
gagatgatcttacacgagtttctaaagtcagactatgagggctttgccaccttgatccgt
gagtggccaggagagctctacaataacatgaccattgttcaggcagtcaccgaccacctc
aagaaggaccccatgaacagcaccctgctcaccacactggctgaactgtatacatatgac
cagcggtatgaccgagccctggagatctacctgagactgaggcataaagatgtttaccag
ctgatccacaaacacgacctcttctcctccatagaagacaagattgtgctcctcatggac
tttgataaagagaaagctgtcgacatgctcctggataacgaagacaaaatattgattgac
agagtggtggaggaactcagggacaggcctgagctgctacacatttatctccacaaacta
ttcaagagggaccaccacaagggtcagcggtaccatgagagacaaattggcctgtatgct
gaatacgatcggcccaacctactgccattcctgagagacagcatccactgcccactagaa
aaggctctggaaatttgtcaggagagaaactttgtggaggaaactgtcttcctgctcagc
agaatggggaactgtagacgggctcttcagatgatcatggaggaactggaggatgtggac
aaggccatagagttcgccaaggagcaggatgacgctgagctgtgggaggatctcatctcg
tattccatcgataagccacccttcattactggtctcctcaataacattgggacacatgtg
gatcccattttactcatccaccgcataaaggagggcatggagattcctaacctcagagac
tcactggtcaagatcctccaagactacaacctgcagatcttgctccgggagggttgtaag
aagatcttggtggctgactcgctgtcactgctccagaagatgcataggactcagatgaga
ggggtcagggtggatgaagagaacatctgtgaatcctgtcacgcttcaatattaccatca
gatatggcccagaacttcagtgtggtggtcttccactgcagacacatgttccacaaggag
tgtttaccttctcctggaacgattcctggggtccagttttgcaacatctgcagtgcgaag
cggagagggccaggaagtggaatactggagatgaagaagtaa
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integrated database retrieval system
