KEGG   Oncorhynchus mykiss (rainbow trout): 110535654
Entry
110535654         CDS       T07259                                 
Name
(RefSeq) poly(U)-binding-splicing factor PUF60 isoform X1
  KO
K12838  poly(U)-binding-splicing factor PUF60
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110535654
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omy03041]
    110535654
Spliceosome [BR:omy03041]
 Complex A
  U2 snRNP components
   U2 related factors
    110535654
 Complex B
    110535654
SSDB
Motif
Pfam: RRM_1 RRM_10 DUF1543 Collagen
Other DBs
NCBI-GeneID: 110535654
NCBI-ProteinID: XP_021476457
Ensembl: ENSOMYG00000044344
UniProt: A0A8C7UN97
LinkDB
Position
11:37335611..37360066
AA seq 561 aa
MAVTEIAGGTALMMENGQGTGAKLGLPPLTPEQQEALQRAKKYAMEQSIKSALVKQTIAH
QQQQLTNLQMAAVTMGFGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
PFGPIKSIDMSWDSVTMKHKGFAFVEYEIPEAAQLALEQMNSVMLGGRNIKVGRPGNIGQ
AQPIIDQLAEEARAYNRIYVASVHPDLSDEDIKSVFEAFGRIKSCTLARDPTTGRHKSFG
FVEYDKPQSSLDAVSSMNLFDLGGQYLRVGKAVTPPMPMLTPTQPGGLPPAAAVAAAAAT
AKITAQASMIPFQRDLLAFQEAVTGASILGAMAGANQMGQMGSMGQMGSMGQMGSMGQMG
IPQAVMAAQAPGMITGVTPVRPNLPVLPQVGLVNPVLASPPVITNPAQPNPSLQELQKKK
QEEKEMLQDGTGQEMLSDQEHMSISGSSARHMVMQKLLRKSESTVMVLRNMVGPEDIDDD
LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMASEMNKAIQALNDRWFG
GRKVIAEVYDQERFNSSDLSA
NT seq 1686 nt   +upstreamnt  +downstreamnt
atggcggtgacggagattgcgggagggacagctctgatgatggagaatggacagggcaca
ggcgcgaagcttggcctgccgcctctcaccccagagcagcaggaggcactccaaagggca
aagaagtatgcgatggagcagagcattaagagtgccttagtgaagcagaccattgctcat
cagcaacaacagcttaccaacttacagatggcagcagtgacaatgggctttggagatcct
ctctcacctttacaatcggtggcggctcagcggcagcgtgctctagccatcatgtgccgg
gtgtatgtgggctccatatactatgagctcggggaggacaccatcagacaggcctttgcc
cccttcggccccatcaagagcattgacatgtcatgggactcagttacaatgaagcacaag
ggctttgcctttgtggagtatgagatcccggaggctgcacagctggctctggagcagatg
aactcggtcatgctcgggggcaggaacatcaaggtggggcggccaggtaacattggtcag
gcgcaacccatcatcgaccagctggcagaggaggcacgcgcctacaaccggatctacgtt
gcctccgtccaccccgacctctcagacgaggacatcaagagcgtctttgaggccttcggg
aggatcaagtcctgcacgttagccagggaccccaccacaggaagacacaagagctttggc
ttcgtcgagtatgacaagccccagtcgtccctggacgcagtgtcctccatgaacctgttt
gacctggggggccagtacctgcgggtgggcaaggctgtgacccctcccatgcccatgttg
acccccacccagcctggtggcctgccccccgctgcagccgtggctgctgcagcagccacc
gctaagataacggcccaggcaagtatgattcccttccaaagggatctattggccttccag
gaggctgtgaccggggcgtccatcttgggggcgatggctggggcaaaccagatgggccaa
atgggttcgatgggacaaatgggctcgatgggacaaatgggttcgatgggacaaatgggc
atccctcaggcagtcatggctgcccaggcccccggaatgatcacaggtgtgacaccagtg
cgtccaaacctgccagtgctgccccaggtgggcctggtcaaccctgtgctggcctcaccg
cctgtgatcaccaacccagcccagcccaacccctctctgcaagaactgcagaagaagaag
caggaggagaaggagatgctgcaggacggaacaggccaggagatgttgagcgaccaagaa
cacatgagtatctcaggcagcagcgccagacacatggtcatgcagaaactgctgaggaaa
tcagaatctacggtgatggtgttacggaacatggtggggccagaggacatcgatgacgac
ctggagggtgaggtaactgaggagtgtggcaagtttggtgccgtcaaccgagtcatcatc
taccaggagaagcagggcgaggaggaagatgccgagatcatcgtcaagatctttgtggag
ttctccatggcctcggagatgaacaaggccatccaggcactcaacgaccgctggttcggg
ggtcgcaaggtcatcgcagaggtctacgaccaagagcgcttcaacagcagcgacctctcc
gcataa

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