Oncorhynchus mykiss (rainbow trout): 110535782
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Entry
110535782 CDS
T07259
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110535782
Membrane trafficking [BR:
omy04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
110535782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
Fer4_11
Motif
Other DBs
NCBI-GeneID:
110535782
NCBI-ProteinID:
XP_036791485
Ensembl:
ENSOMYG00000013954
LinkDB
All DBs
Position
11:complement(47207288..47266633)
Genome browser
AA seq
3264 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPFSFGVSLQ
NLSLQTADENWMPCLLDEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQDSIP
GGSTPMNHDFIFRPITADAKLRMNPRSDVDFSSPKVDLVVNLREVAVELNRPQYISILEL
LGSVDMMSRNLPYRKYRPQVHVHTNAYLWWQYVITGIMEVDVKPRLHMWSWQHIRCHRQT
VKQYRELYKAKITSKKPTEKQLRELEEPERTLDIFNITLARQQAEMEASKAGLRIFRPGV
KVEEEESQGWLGWMWSGWSGDCGDEAKEVKTGAFDELMTSAEKAKLYTAIGYSEIAVNHN
LPKNFEDMKINFHMERMSVSMKDNKDQNEILKLTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVTGLASNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLRVESQPLEIIYDAV
TVNSMSAFFSPPDDLQLDDLTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFHDSTQNLMLLDLGHFKVSSLSREGLPQLSVGRSTIEDIMSRAYDSFDVQLSSL
QFLYSKPDGDWKKARKLRQSALHILEPVDVKVVFSRAMVVTDSRMPKFKISGELPLLSLR
ISDDKVRGVLELIDSIPLPESRPAPRSTNAHSTSKALKQSYTPQLTPRKPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDRPFFPDNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMTFE
ISKLSVQLCRLSGGEEVTVLHLDIEGLGTELKLRTFDMTSYTFLREICLECPEYMDSEEK
KVHLITTLDNTEDDLLTLEYTKADKNGPEFKSEYKNTEQSVKVNFSSLDIHLHTEALLNA
MNFLISLLPPTKEVAPSQEELPTIPEEDEGEGEEGEKKEGSAVAKKTSSKKSKFEDVVNL
HIRADLNCLKVFIRGQSHRIAEIRIEGLVSEVLMRKKAVEVLANLKNIVILDCDKEALYK
QCVSIADEEVFAFRMVNHTEATEGDAYLDMGKVDTSVTLTVGCIQVIFLNKFVSSILAFI
NNFQVAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFNAPVVFLPQSSSSANVIVA
DLGMVTVKNRFAMVPSQMHVKIPPVMDTMTVGLSDLKMYRTTFEEGRFQGEIQLLKPVNL
DLSIQRNLSASWYHSIPDIEITAHLKPMNLILGQDDMTVVLRTLSGNLSETSDSASPPPP
PRTVDRSDTASTKGSQASGGTGTNPTSGNTVVTAAVVETQKSTKLKSTLKLDFKFDSMTL
VLYSPNGTEVQVLDSRDEQLKLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRCRV
KKITARMMAMRPGAERNVMVEVNYKQGRDGTSLDTVVQDVYLCASMEFLLTVADIFLKAS
QQGFSSATPKNSSSTKPTAAAASKESGPVGVVAKSEINVLVKNPEIVFVADLTRADAPAL
VMTTECELVMKSDLDGQLMTAVVKDLKVVACPFLKEKRNKETTVLQPCQVFFKSTQSSTS
PQAMEVCINALTLKVSPIIINTVITIQSVLSPAGAETPQSELESPVPPDLWERRSWRDLK
LWFLEEEGKDEDAQSLVPLIPQGESLQLAINSICLTLEAGVGHRTVPMLLAKSSFHGDVK
NWSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDETRDGFRPWTLGLKMKKKPVKYTGI
SEEVDYSIPDYKTVISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQASDSFQKDEAPF
VVKNRLGLTVSVVHSELFSPLGREATARRVELQDGESLNMDYRRTTTHSDQFSAMTSLVA
KDYYIQPTPVGHTSTGMIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGSKYIKIRSPF
QIINHFSIPFRVMEGSTSLGISLPTEEFCVPLDSYRSELRLQPVTEGDDQYDCSEGFSYE
LVSQQPGARVQQTCHRHGDSAGVLMVNIVPLKDTVTSQHTGMAGEHFDEPYILHLWPSVL
LRNLLPYPITYRLQDSEEPTPITLMDGHSAQLHTAIMDQSSLELRLLDYLGQDWQAHYGL
CGDLDEITFIVFSSLRDEEEVVRLGERGEGKRAELDIAVHVKYDAGQTEVAIHSPYWMVN
KTGRLLQYKADDIHRKHAMDYDMPLLFSFKPHNFLQNNKVRLMISDSDLSDDFSLDTVGS
YGEVKCKGRLKDYVIGVKIDASSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDDWTEAR
PQQAAIPFWPERDSKKLKVKVEGSRSTPQTMDFTKPENCLLLHLDNTLGGVIMDVNLSDH
SIIIRFSDYHDGAAPFLIINHTEEQTVEFYQRFRRDSSEWVADELLGLSFSVEETQPSSQ
KEKDKLSPGKAMYYTWAEPTGSRSLAWQCGSYSGELRSEEDLRLDVNEEGKLYLISFYEG
LQRVALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGVSLVNNSSRQEVSFIGITSSDV
VWESKPKKKSRWKPLSGKDAELLETHFKEYTESGPVDNAILDLENNFQVSLTHNGQDMRM
MQPYDAPIRRSFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKSV
TMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDLFTPENASV
MTSEQQVELFEKDIEYLKTELNDVSATDTSPISLYEYFHISPIKLHLSFSLSSGGEDGNK
EKRETEIIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFRTRQQLQWEVIRHYSKQ
AIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVG
GAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLTRGGKGLVSGF
VSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETS
QDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYRYFAHAKVNESDFLMIT
KRGIFFVTKGTFGQLTCEWQYLFDEFTKEPMIVEGRRLRIEAKERVKSVFHAKEFGKIIN
FRSPEIAKWVLTKLEDARESLHKY
NT seq
9795 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttttaggggattacgttgta
aaccttgacagctcacaactcaagctcgggatttggggaggtgatgcagtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagcaggg
catataggacgcttggagttgaagattccatggaagaatctgtacacccagtcagtggaa
gccacactggatggagtctacctactcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagctccaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcagagcaagaaaaccccgcacttgagaagcaggacacctttgtg
gagaaacttgtgacgcaggtgatcaagaaccttcaagtgaagatctccaacatccacgtc
cgctatgaggatgatgtcaccaaccccaattgccccttttcatttggagtgtcactgcag
aacctcagccttcagacagcagatgagaattggatgccttgtctcctggatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcttactggaatgtgaactcg
atgctgtactccaatcacatgccagatgaggccctgagatgcctccaggacagcatcccg
gggggttccactcccatgaaccacgatttcatttttcgtccgataacggccgatgcgaag
ttgcgcatgaacccccggtcagatgtggacttctcctctcccaaggtggacctggtggtc
aacctaagagaggtggccgtggagctcaacagaccacagtacatcagcattctggagctc
ctgggatcagtggatatgatgtcacgcaacctgccctacaggaaataccggccgcaagtc
cacgtgcacaccaacgcctatctatggtggcagtatgtgatcacaggcatcatggaggtg
gacgtgaagccgcggctgcacatgtggtcgtggcagcacatccgctgccaccggcagaca
gtcaagcagtacagagagctctacaaggccaagatcaccagcaagaagcccactgagaag
cagctcagggagctggaggagcctgagcggactctggatatttttaacatcactctggcc
aggcagcaagctgagatggaggcaagcaaagcggggctgcgtatcttccgtccgggggtg
aaggtggaggaggaggaatctcagggctggttgggctggatgtggtccggctggtcagga
gactgtggcgacgaggccaaggaggtcaagaccggagctttcgacgagcttatgacttct
gctgagaaggccaaactctacaccgccatcggctacagtgagatagctgtcaatcataac
ctgccaaagaactttgaggatatgaagattaatttccacatggagaggatgtctgtctca
atgaaagacaacaaggaccagaatgaaatcctcaaactcacagttgaagatctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcggcccagctcagtctgttt
gaggtgacaggactagccagtaaccggccggcacccacattgctgtcgtcaaggaaggct
gccacggtaacggggacgcccttgttggacatcctgtttgagaccaaccctctggatgag
agcgctgatcagcggctccgcgtcgagtcccagcctctggagatcatctatgatgctgtg
acggtaaacagcatgtctgcgttcttctcgccgcctgatgacctccagctggacgatctg
accaacgccactctcatgaagctggagcagttccgagaccgcacctccacaggactgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgta
atcgttccccaaaccggcttccacgactccacccagaacctcatgctattggacctgggc
cacttcaaagtgtctagtctgagcagagaggggctgccacagctctctgtagggagaagt
actatagaggacattatgtcccgggcctacgacagcttcgacgtccagctcagcagcctt
cagttcctctacagcaaaccagatggggactggaagaaagcccgtaagctgaggcagtcg
gccctccacatcctggagcctgtcgacgtcaaggtggtgttcagcagagccatggtggtc
acagattcccgcatgcccaagtttaaaatctccggggagctgcccctcctgtctctgagg
atctctgatgataaggtacggggcgtgctggagctgatcgacagcatcccgctgccagag
agcaggccggccccgcgcagcaccaacgctcactcaacatccaaggctttaaagcagtcg
tacacccctcagctaacccccaggaaaccaaccatggctgaactgcgcaactccctaata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggagac
cgtccgttcttccctgacaacatgcccagccccttgcagcgctccgactcagtcaagagg
agaggtctggtcaagaaagaccccaagaagaacatgaccgagttcctcatgacatttgag
atcagcaaactgtccgttcagctgtgtcgtctctctggaggcgaggaggtcacagtgttg
cacctggacatcgaggggctgggcaccgagctgaagctacgtaccttcgacatgacatcc
tacacgttcctacgagagatctgcctggagtgccccgagtacatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggatgacctcctcacattggagtac
actaaggctgataagaatgggccagaattcaagtctgagtacaagaacactgaacaatca
gttaaggtgaacttctcgtctctggacatacacctgcacacggaggctctgctcaatgcc
atgaacttcctgatcagtctcctcccaccgaccaaggaggtggcgcccagccaggaggag
ctgcccaccatccccgaggaggatgagggagagggggaggaaggcgagaagaaagaggga
tcggctgtggcaaaaaaaacctcttctaagaagtcaaagtttgaggatgtggtgaatttg
cacatcagagccgatctcaactgtctgaaggttttcatccgaggccagagccacaggata
gcggagatccgcatcgagggcctggtgtcggaggtgctgatgaggaaaaaagcggtagag
gttctggccaacctgaagaacatagtcatcctggactgtgataaggaggcgttgtacaag
cagtgtgtgtccatagccgatgaggaggtgtttgctttccgcatggtgaaccacactgaa
gccacggagggcgacgcctatctagacatgggtaaagtggacaccagcgtcaccctgacg
gtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttcatc
aacaacttccaggtggccaaggaggccctggctgaggtgacggtgcaggcagcggagaag
gcggccacaggggtgatggagctggctgagcgcagcacccgcatctccctggacgtggac
ttcaacgctcccgtcgtcttcctgccgcagtcgtcgtcctccgccaacgtcatcgtggcc
gacctcgggatggtcacggtcaagaaccgcttcgccatggtcccctcccaaatgcacgtc
aagatccctcccgtcatggacaccatgaccgtgggcctcagcgacctcaagatgtacaga
accacctttgaggaggggaggtttcagggggaaatccagcttctgaagccggtcaacctg
gacctgtccatccagaggaacctgtcagcctcctggtaccacagcatccccgacatagag
atcactgctcacctcaaaccaatgaacctgatcctgggtcaggatgatatgacggtggtg
ttgaggactctgagtgggaatctgtcagagacgtcagactctgcttccccccctcctcct
ccgcgtactgtggaccgctccgacacggcctctaccaaaggctcacaggcgtcaggaggt
actggtactaaccccaccagcggcaacacggtggtaactgctgcagtggtggagacccag
aagagcaccaagctgaagagcacactcaaactggacttcaagtttgactccatgaccctg
gtcctgtacagccccaatgggactgaggtgcaggtgttggactcgagggatgagcagctg
aagctggctgagtttaccctggggactatctctacatctgtccacatgttctcagacgga
tctatgaaggcctccgtcaaactcacagactgcctgctagacgacaaaagatgcagggtc
aagaagatcactgccaggatgatggcgatgcgtccgggcgctgagaggaacgtgatggtg
gaggtgaactacaagcagggccgcgacggcacctctttggacacggtggtgcaggacgtg
tacctctgtgccagcatggagttcctgctcactgtggccgacatcttcctcaaagccagc
cagcagggcttctcctccgccacccccaagaacagcagtagcactaaacccactgcagcc
gcagcctccaaggaatctggtccagtgggggtggtggcaaagtcagagattaatgttctg
gtgaagaaccccgagattgtgtttgtggccgacctgacacgtgccgacgccccggccctg
gtcatgaccacggagtgtgagctggtgatgaagagcgacctggacggtcagctgatgact
gcggtggtcaaggacctgaaggtggtggcctgccccttcctgaaggagaagagaaacaag
gagaccactgtgctgcagccctgccaagtgttcttcaagagcacacagtcctccacctcc
ccgcaggccatggaggtctgcatcaacgcactcacactcaaggtgtcgcccatcattatc
aacacagtgattaccattcagtcggtgctgagcccggccggtgccgagacaccccagtct
gagctagagagccccgtgcccccagacctgtgggagcgccggtcctggagggacctcaag
ctgtggttcctggaggaggagggtaaagacgaggatgcccagtccctggtcccgctgatt
ccccagggcgagtccctgcagttggccatcaactccatctgcctgacactggaggcaggg
gtgggccaccgcaccgtccccatgctcctggccaagtcctccttccacggtgacgtcaag
aactggagcaccctcatcaacctgcacagccagctcaacctggaggttcactacttcaac
gaggtgatgggggtgtgggagccactgctagagcccctagaagacgagacccgagatgga
ttcagaccctggaccctgggattaaagatgaagaagaagccagtgaagtacacaggtatt
tcagaagaagtggactacagcatccctgactacaagactgtcatcagcatcagcagcaag
gaccaacttaacatcaccctctctaagtgtggactgggcatgctcagtaacctgggcacg
gcctttgcggaggcggccaagcaggcatcggatagtttccagaaggacgaggctccgttc
gtcgtgaagaaccgtctaggtctgactgtgtcggtggtgcacagtgagctgttcagcccc
ctgggtcgcgaggccacggcgcgccgggtagagctgcaggacggagagagcctcaacatg
gactaccgtcgcaccaccacccactcagaccagttctctgccatgacttcgttggtggcc
aaggactactacatacagcccactccggtgggccacacttcaacaggcatgatcccgttg
atcaaagtggggcgtggcatgtacagtgtcatgcacaaagactctggggtcacccgtttc
ctggtctgtcaaatctactctgtggagggaagcaagtacatcaagatccgctctcccttc
cagatcataaaccacttctccatcccattcagagtgatggagggctctaccagtctgggg
atatcactgcctacagaggagttctgtgtgcctctggactcctacaggtcagagctaaga
ctgcagccggtaaccgagggagacgatcagtacgactgctctgagggtttcagctacgag
ttggtgagccagcagcccggtgcacgtgtgcagcagacctgtcatcgccatggtgacagc
gctggcgtcctcatggtcaacatcgtccctctgaaagacacggtgacatcacaacacaca
ggaatggccggggagcactttgacgagccctacatcctgcacctgtggccctccgtcctg
ctccggaaccttctgccttaccccatcacctatcgcctacaggacagtgaagagcccacc
cccatcaccctgatggacggccactcggcccagctgcacaccgccatcatggaccagtcc
agtctggaactccgcctcctcgactacctgggtcaggattggcaggcccactacggtctc
tgtggcgacctggatgagatcaccttcattgtgttcagctctctgcgcgatgaagaggag
gtggtcaggttaggagagaggggagaagggaagagggcggagctcgatattgcggtgcat
gtgaagtacgacgcaggccagactgaggtggctatccattctccctactggatggtgaac
aaaacaggccgcctgctgcaatacaaggccgatgacatccaccgcaaacacgccatggac
tacgatatgcctctgctcttctccttcaagccacacaactttcttcagaacaacaaggtg
cggctgatgatctcggacagcgacctgtcggatgatttctccctggataccgtgggtagt
tatggtgaagtgaagtgcaaagggaggctgaaagattacgtgatcggagtgaagatcgac
gccagcagtttcagcctgacccgtatcgtaagctttgtgccatactacctgttagtgaac
aggaccaaacatgtgatctgggtgggagaggagggccaggacgactggaccgaggccaga
ccacaacaggcagccatcccattttggcctgagagggactccaagaagctcaaagtcaaa
gtagaaggcagtcggtcaactcctcaaaccatggacttcaccaaaccggaaaactgcctg
ctgctgcatctggacaacactctgggcggggtcattatggatgtgaacctatcggaccac
tcgattatcatccgtttctctgactaccacgacggggccgcccccttcctcatcatcaac
cacaccgaggagcagacggtggagttctaccagagatttcggagagattcatcagaatgg
gtggcagacgagctgctcggcctctccttctcagtagaggagacccagcccagtagtcag
aaggagaaggacaagctaagccccgggaaggcaatgtactacacctgggctgagcccact
ggatcgcgctctctggcctggcagtgtggcagctacagcggcgagctgaggagcgaagag
gacctgcggttggacgtgaacgaggagggtaagctgtacctcatctcgttctacgagggc
ctccagcgggtggcgctgttcacagaggacagacgcatatacaagctgctgtgtgagagt
gagaaggccgagctggccgaacaagagatcatcctctccctgcaagacgtgggcgtctcc
ctggtcaacaacagcagccgccaggaggtgtccttcatcggtattaccagttcagacgtg
gtgtgggagtccaagccaaagaagaagtctcgctggaaacccctgagtggaaaagatgcc
gagctgctggagacccacttcaaagagtacacagagagtggaccagtggacaacgccatc
ttagacctggagaacaacttccaggtgtctttgacccataatgggcaagacatgaggatg
atgcagccatatgacgctccaatcaggaggagcttcctgccaggggtgaaggtggagtac
agcgtatcggcccgccagagtgcctaccgtgtccagatcaaccgcatacagatccagaat
cagctacctggagcaatcttcccatatgtcttctaccctataaaactacctaagtctgtc
accatggactcagagcccaaacctctgaccgacatcagcattgttaccagggcagcaggg
cactctgatatctcacgcatcaagtatttcaaggtgctaatccaggagatggatctgaag
ttggacttgggcttcctttatgccatcttggatctgttcactccggagaacgccagcgtg
atgacgtcagagcagcaggtggagttgtttgagaaggacatagagtatctgaagacggag
ctcaacgacgtctcggccactgacacatcccctatcagtctctatgagtacttccacatc
tctcctatcaagctgcacctcagtttctctctgagttctggaggagaggatggtaacaag
gagaagagggagaccgagatcatccctgtccagtccctcaatctgctgctgaaaagcatc
ggagcaaccctcactgacgtgcaggatgtcgtcttcaaattggccttcttcgagctgacc
ttccagtttcgcactcgccagcaactacaatgggaggtcatcagacactactcgaaacag
gcgataaagcagatgtatgtgctggtgttgggcttggacgtgctgggaaacccctttgga
ctgatccgaggtctgtcggagggagtggaggctttcttctacgagccctatcagggagct
atccaggggccagaggagtttgtggagggtatggcgctgggggtgaaagcgctggttgga
ggagcagtaggtggcattgcgggcgctgcctccaggatcacaggcgccatggcgaagggt
gtggctgccatgacaatggacgaggagtaccagcagaagagacgggaggctatgaacaag
cagcctagcggcctgagagagggcctgacccgcggaggcaaaggactggtgtctggcttt
gtcagtgggatcacagggattgtcaccaagcccattaaaggtgctcagaaggagggcgcg
gcgggcttctttaagggtgtgggcaaggggctagtgggtgctgtggccagacccactgga
ggcatcatcgacatggccagcagcaccttccagggcatcaagagggcagctgagacatcc
caggatgtggagagtctgcgtccgcctcgcttcatccatgaggacggggtcatccgacca
tacaaggaaagagagggcatcggcagccagatgctacagaaaattgaaaacggaaggttc
gccaagtacagatactttgcgcacgccaaagtgaacgagtccgatttcctgatgatcacc
aaaaggggaatctttttcgtgaccaaaggtacatttgggcagctgacctgcgagtggcag
tatctgttcgacgagttcaccaaggagcccatgatcgtggaggggaggcggcttcggatc
gaggccaaggagagagtgaagtctgtgtttcatgccaaagagtttgggaagataatcaac
ttcagaagtccagaaatagccaagtgggttcttaccaagcttgaagacgccagggagagt
ctacacaaatactga
DBGET
integrated database retrieval system
