Oncorhynchus mykiss (rainbow trout): 110535817
Help
Entry
110535817 CDS
T07259
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X2
KO
K28108
shortage in chiasmata 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110535817 (shoc1)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Meiosis-specific proteins
Others
110535817 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
110535817
NCBI-ProteinID:
XP_021476799
Ensembl:
ENSOMYG00000030682
LinkDB
All DBs
Position
11:49298531..49322479
Genome browser
AA seq
1551 aa
AA seq
DB search
MSEDGCSFSSHIFSAVKYRALDYSSEASTSLKLTMNWLALPMPYHLGSSDLYPHTGNPPE
VTYRKPWSRGNVISNCKLFVSGSLLDDLGIKGQPTYSLEKLSVSLTQMRVDLLEVIPSSN
PNSQLDLDRDEAAWVLREARKDKGHFVCNESFSKSTGEKMSPRHQRDDLVMPEEVLFSDH
LPQFRKHLPSMKAKLSRLRNLPVSDPLLSSTGGTLSEEAIFRHCVAYEVPLDGETESSET
CSNTDEDFSKESLLNEESLMLPVEMDTCTPRREDCLPFSNIPKLLNVVPELIEERTSCLD
MLTKATPPDALESVDISQFEVPRLPVNDSHCEINEMLLDLKSSDHLVLPTQMEMDLPLTP
STKPNLTQLCLASSQLPAEQISPLYRYYFVSEKDQEEMEEALWRAEKHLDLVVGFLLAEP
QKSESVVQLQPLSEVLLGIGRDNSVRLDEGMELSLLGTNSPELIGMYGNGSSDFTESMMI
SDQPHLMETLSSMIEDFTLLSPCQMDNILRESVDDSELSGPPSEIKGRSILKNATPMVVP
YHQEREGAGNTVVSAPAFATSQERERTGNVALTAQASTSSQEKERSGTVVFSTQAVSTSH
EKERAGSVAISAAQATTTTYLEKLNHAVRPQKKEGLPDQRANVSKLPTPRPSVRYRHMSL
PVAKPQKDLDPLSTFMMLRAQQRTYVSVSPQNHTSTPVAQVEQQTPQPPTTEMRPGFDVK
PVAYAVTGNDIRDPEEIIQPVPEDRHNSKVIHVQATESQFWAYRELQAFALPCLSRAREL
GLTNTACGDYSNLYPDHTRFLLKQQEKELSIRQGQDPEALFNYVALIHVLVTVKDLLFKC
DLSTAVEYLSKATEACVGQSLDKLVRKLEIVLYLSQKKQEPNPKILELQEQLTTWVQSKS
KGVQNSNVLVIITMDLDCARAMLIKALSQVTGETVAAVYPEESRSKLEGSKVLDSLQRSC
CVVVCSQHMGADFPWDCFSLVVEYSNTEHSPWATICTERNITHITFQTRIPNASVSDPES
WSLEQSVPFVLFVTEGLLSCPLLLQILESTCNMTVLERSHSQSLQMLGGTHHYAVITVDE
STAVIIQEQEELCQERACESLVIRLTALSLQYSCCWLILHCQQDSGLTSEGFNNLVLVYS
SLVLFGLKTEDLDVKVLIVSEVVDIAKWICQIAFHTLLSSDRDPLSYLDREWLSVISSKE
ERCLLGFPCVNPLVAQLMLSRGPSLHWLLGASLSQLQELLPEVPYKVVKLFSDTTSLYKL
TAAASSTESHTDFTHQKDHNSPTEPWATSRDNQYTHTDTHTSRDQHADCNRHTHCDPEPF
NSICFLAGSPSVESVAGSFYEESSVMTKEDGADFQVDLSPSFGSQQAPFQHTWSHNPWEV
EKSNELKFVGWNRGGEEWTGSAPLHQESCGSPRNYAPENKFQTGLSSSFSYSTNTQRPAY
SDNQMYSFSTVGYSDRLHYPDVSHYPSLASPRGALAWGGSSSGSPYSTALGRGDMSVSPD
YGTSYRTGMERKRRAEGPEMAGTVLTPLKRGKLSYEKVPGRSDGQTRLRFF
NT seq
4656 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagatgggtgctctttctcaagtcatattttctcagcagtcaagtatagagct
ctcgactattcttctgaggcttctactagtctcaaattgaccatgaactggctggccctg
ccaatgccctaccatctgggtagcagtgacctctacccccacactggtaacccccctgag
gtcacctacaggaaaccatggagcagagggaatgtgatttccaactgcaaactgtttgtc
agtggatctttactagatgacttgggcattaaaggacaaccaacatactctcttgagaag
ttgagtgttagtctgacccaaatgagagtggatcttctggaggtgataccgagctccaac
cctaactcgcagcttgacttagatagagatgaagcagcgtgggtcctgcgagaggctagg
aaggacaagggacactttgtctgtaatgaatcctttagcaagagcacaggagagaaaatg
agcccaagacatcagcgtgatgatcttgtcatgccagaggaggttctgttttctgatcac
ttgccacagttcaggaaacatctgccctccatgaaagccaagttgtccagactgaggaat
ctgcctgtgtcagatcctcttctcagctccactggaggcaccctgtcagaggaagctata
ttcaggcactgtgtggcctatgaggtaccccttgatggagagacggaaagctccgaaacc
tgttcaaacactgacgaggactttagcaaagagtcgttgttgaatgaagagtctctgatg
ttacctgttgaaatggacacctgcacacccaggagggaagattgcctccctttttcaaat
attcctaaactattgaatgttgtacctgaattgatagaggagcgaacctcttgcctggat
atgctcactaaagcaactcccccagatgcactggagtcagtagacatatcccagtttgaa
gtgccaaggctgccagtcaatgactctcactgtgagattaatgaaatgctgctggatctc
aagtcatcagatcacttggtgttgcctactcagatggagatggacctacccctcaccccc
tctaccaagcccaacctgacccagctctgtctggcctcctcccaactcccagctgagcag
atctctccactctatagatattattttgtgtctgagaaagatcaggaggagatggaagag
gcactttggagggcagagaagcaccttgacttggtagtgggctttcttttggcagagcct
cagaagtcagaatccgttgtgcagctccagcctttgagcgaagtcttattagggattggt
cgggacaactctgtgagactcgatgaaggaatggaactatcacttctgggaacaaactca
ccagaactgatagggatgtatgggaatggttcctctgacttcactgagagtatgatgatc
tcagaccaaccccatcttatggagacattgagcagtatgatagaggacttcacactacta
tcaccctgccagatggacaatatattgagggaatctgtagatgactctgagttgtcaggc
ccaccaagtgagatcaaaggcaggtctatcctgaagaatgcaacgcccatggttgtgccg
tatcatcaggagagagagggagctgggaacacagtcgtttcagcaccagcttttgccact
tcccaggagagagagaggaccgggaatgtggccctcacagcccaagcatctacttcttcc
caagagaaagagagatctgggactgtggtcttttcaacgcaggctgtttcaacttctcat
gagaaagagagagctgggagtgtggccatctcagcagcacaggctaccaccactacttat
ctggagaagttaaaccatgccgttagacctcagaagaaggagggtttacctgaccagaga
gctaatgtatccaaactcccaacccccagacccagtgtgagataccgtcacatgagtctc
ccagtggctaaacctcagaaggacttagaccctctgtccactttcatgatgttaagggcc
caacagagaacctacgtctcggtgtcgcctcaaaaccatacaagcaccccagtggcacag
gtggagcagcagacaccacagccacctacgacagaaatgaggcctggcttcgatgtaaag
cctgttgcctatgcagtcacaggaaatgacatcagagaccctgaggaaatcattcagcct
gtccctgaggacagacataacagcaaagtcatacacgtccaagccacagagagtcagttc
tgggcgtacagagagctgcaggcgtttgctctgccctgcctgtccagagctagggagttg
ggactgaccaacacagcctgtggagactacagcaacctgtacccagaccacacacgtttc
ctactgaaacagcaggagaaggagctcagtattcgacagggccaggacccagaggctttg
tttaactatgtggcactgatacatgtccttgtgacagtgaaggacctgctcttcaagtgt
gacctcagcactgcagtggagtacctatccaaggccacagaggcctgcgtggggcagagt
ctggacaagctggtgagaaagctggagattgttctgtatctcagtcagaaaaaacaagag
cccaaccctaagatactggaactgcaggaacagctgaccacatgggtgcagagcaagagc
aaaggggtccaaaactccaatgttctggtgataataacaatggacttggactgtgccaga
gctatgctcattaaagccctgagccaagtcacaggtgagactgtagctgcagtgtatcct
gaggagagtcgaagtaagctggagggttcgaaagttctagatagcctgcagcgtagctgc
tgtgtggtggtgtgtagtcagcacatgggagcagacttcccctgggattgtttctccctg
gtggtggagtacagcaacacagaacactcgccctgggctaccatctgcacagagaggaac
atcacacacatcaccttccagaccaggatacctaatgcctctgtgagtgaccctgagtct
tggtccctggagcagagtgtccccttcgtgttgtttgtgaccgagggtctgctcagctgt
cctctgttgcttcagatactggaatcaacgtgtaatatgactgtattggagaggagccac
tctcagtccttacagatgcttggagggactcaccactatgctgtgattacagtagacgaa
agcactgcagtcatcattcaagagcaggaggagctgtgtcaggagcgggcctgtgagagt
ctagtgattcgactgactgctctgtctctgcagtacagctgctgctggctcatccttcac
tgccagcaggactctgggttgaccagtgagggcttcaacaacctggtgttggtctactcc
tctctggtgctgtttggcctcaagactgaggacctggatgtcaaggtgctgattgtatca
gaagtggtggacattgccaaatggatctgccagatagccttccatacactgctgtccagt
gacagagatcctctcagctacctggacagagagtggctttctgtgatttcctcaaaggag
gagaggtgcctcttaggtttcccctgtgtgaaccctttggtggcccagctgatgttgagt
aggggcccctctctccactggctcctgggggcctccctctcacagctgcaggagctgctc
cctgaggtcccttacaaagttgtcaagctcttcagtgacaccacgtctctgtacaagctg
actgcggctgcctcctccacagagtctcacactgacttcactcatcagaaagaccacaat
agccccactgagccttgggccacaagcagagacaatcaatacacacacaccgacactcat
acaagccgcgatcaacacgccgactgcaaccgccacacacactgcgacccagaaccattc
aactccatctgcttcctcgctggctcccccagtgttgagagtgtagcggggagcttctat
gaagaaagctctgtcatgaccaaggaagacggtgcagacttccaggtggacttgagtccc
tccttcggctcccagcaggccccttttcagcacacctggagccacaacccatgggaggta
gagaagagcaatgagctgaagtttgtaggctggaatagaggaggagaggagtggacgggc
agcgcacccctgcaccaggagtcctgtggctcccccagaaactacgcgccagaaaataaa
tttcagacgggcctctcatcctcattcagctacagcaccaacacacagagaccagcgtac
tccgacaaccagatgtactcgttctctacagtagggtacagtgaccggctgcactaccct
gatgtcagccactaccccagcctggcctcgcctagaggagctctggcatgggggggcagt
agcagtggcagcccctacagcactgccctggggaggggagacatgagtgtgtcacctgac
tatgggaccagttacagaacggggatggagaggaagaggagagcagaaggcccagagatg
gctggcacagttttaacgccattgaagaggggaaagctcagttatgagaaggtgccaggc
cgaagtgatggacagacaagactaaggtttttctaa
DBGET
integrated database retrieval system
