Oncorhynchus mykiss (rainbow trout): 110535924
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Entry
110535924 CDS
T07259
Symbol
hnf1a
Name
(RefSeq) hepatocyte nuclear factor 1-alpha isoform X1
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110535924 (hnf1a)
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
110535924 (hnf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
Homeobox_KN
HTH_5
Motif
Other DBs
NCBI-GeneID:
110535924
NCBI-ProteinID:
XP_021476984
Ensembl:
ENSOMYG00000003426
LinkDB
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Position
11:52279381..52288065
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AA seq
558 aa
AA seq
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MEGEERKGEAGPGPGRLSALQEQLIWALLGSGLSREVLVHALGELERERVTPGAEKGDRG
DGESSEEGEMDFPPPIFQELEALAPEEAARQRALVDQLLQEDPWRVAKLVKSYMQQHNLP
QREVVESTGLNQSHLSQHLNKGTPMKNQKRAALYSWYVRKQGEISQQFTNARHALGSGEE
QGEDVRKGRRNRFKWGPASQQILFHAYERQRNPSKEEREGLVEECNRAECLQRGVSPSQL
AGLGSNLVTEVRVYNWFANRRKEEAFRHKLALDMPYNSQSASSTNHTLSHSPEQGMKYSQ
QITCDNLGSSRGHNGDRGLGGRLASPIQLEPSHTLLETHHHKPVSGGGPLPPVSTLTSLH
SLSASPAPHHGLIMTSLPSVMSLGESSLLIGQTVPVINNVGGGFTTLQPISFQQQLHSTS
QQQLTQQFQSHMGHHSPFMATMTQLPCHMYSKSDMSHYPPSSLLSQAMVITDSSSLGTLT
SLTTVRQILTTDPEEQTDQPIQEDSLHLQSPSPVPVSSGNLQLYPPSQSSETHPPHRLSS
SPADINSYIPAQMVSTAQ
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagaggaaaggagaagcagggcccggccctgggcgtctgtctgctctc
caggagcagctgatctgggctctgctgggctctggactgtcccgggaggtcctggtccat
gccctgggagaactggagcgagagagggtcacccctggagcagagaagggggacaggggg
gatggcgagagttcggaggagggagaaatggattttccaccccccatattccaggagctg
gaggccctagccccagaggaggcagccaggcagagggctctggtcgaccaactgcttcag
gaggatccatggcgcgtggcaaaactagtgaagagctacatgcagcagcataacctcccc
cagagagaggtggtcgagtccacaggcctcaaccagtcccatctctcccagcacctcaac
aaaggcacgcccatgaagaaccagaaacgggctgctttgtacagctggtacgtcaggaag
cagggcgagattagccagcagtttactaatgccaggcatgcccttgggtctggagaggag
cagggagaggatgtgaggaagggacgtaggaacaggttcaaatggggacccgcctcccag
caaatcctcttccacgcctatgaacgacagaggaacccaagcaaagaggagagagaggga
ttagtggaggagtgtaacagggctgagtgtcttcagaggggtgtgtctccgtcccagctg
gctggcctgggctctaacctggtgacagaggtacgagtgtacaactggttcgctaaccgc
cgcaaggaggaggccttccgccataaactggctcttgatatgccttacaacagccaatca
gcaagctccaccaaccacacactctcacacagccctgagcaaggcatgaagtatagccag
caaatcacatgtgacaatctggggtcatcgaggggtcacaatggagacagaggcttgggg
ggccgccttgccagccccattcaactggagcccagccacacactcctggaaacacaccat
cacaaaccagtatcaggtggtggccccttgcccccagtcagcaccctgacatcactgcac
agtctgtctgcctcgcctgctccccaccatggactcatcatgacctccctgcccagcgtc
atgagtctgggagaatcctctctcctcataggtcaaaccgtacctgtcatcaacaatgtg
ggaggcgggttcaccacccttcagccaatctctttccagcagcagcttcattccacttcc
cagcagcaactcacacagcagttccagagtcacatgggccaccacagtcctttcatggca
accatgacacagcttccatgtcacatgtacagcaagtctgatatgtcccactaccctccg
tccagcctactgtcccaagcaatggtcatcactgacagcagcagccttggaacactgacc
agtctaaccacagtcagacagattctgaccacagaccctgaggagcagacagaccaaccc
atccaggaggactccctacacctgcagtccccttcacctgtgccagtttcctctgggaat
ttacagctgtatcctccatctcagtctagtgaaactcatccacctcaccgcctctcctct
tcgccagcagacatcaactcctacattcctgcacagatggtctctaccgcacagtag
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