Oncorhynchus mykiss (rainbow trout): 110536181
Help
Entry
110536181 CDS
T07259
Name
(RefSeq) clathrin heavy chain 1 isoform X2
KO
K04646
clathrin heavy chain
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04142
Lysosome
omy04144
Endocytosis
omy05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110536181
04142 Lysosome
110536181
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
110536181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110536181
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110536181
Membrane trafficking [BR:
omy04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
110536181
Exosome [BR:
omy04147
]
Exosomal proteins
Proteins found in most exosomes
110536181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Gp18_dom_I
IFS
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
110536181
NCBI-ProteinID:
XP_021477467
Ensembl:
ENSOMYG00000022635
LinkDB
All DBs
Position
11:complement(62294468..62336443)
Genome browser
AA seq
1683 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIIDMADPNN
PSRRPISADSAIMNPTSKVIALKAAKCLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTVA
LVTEAAVYHWSMEGDSQPIKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKASTLFCFAVRSQAGGKLHIIEVGHPATGN
QPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAPHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAMRSNLAGA
DELFARKFNTLFAQGSYSEAAKVAASTPKGILRTAETIRKFQSVPGQPGQASPLLQYFGI
LLDEGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECCEELGDLVKAVDPTLALSVYL
RANVPSKVIQCFAETGQFQKIVLYAKKVGYSPDWVFLLRNVMRVSPEQGLQFSQMLVADE
EPLANINQIVDVFMEGSLIQQCTSFLLDALKNNQPAEGHLQTRLLEMNLLHAPQVADAIL
GNQMFSHYDRAHIAQLCEKAGLLQRALEHYTDLFDIKRTLVHTHLLNPEWLVNFFGALSV
EDSIECLRAMLSANIRQNLQLCVQVASKYHEQLGTNALVDLFESFKSFEGVFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPDRVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEEVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLKENTFY
DSTVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEHISNLDRAYEFAERCNEAAVWSQLARAQLQRDLVKEAIDSYIKADDPSAYMEV
VSAASKNDNWEDLVKFLQMARKKARESYVETELIFALAKTGRLAELDEFVNGPNNAHIQQ
VGDRCFEEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFAC
VAGEEFRLAQICGLHIVIHADELEELISDYQDRGYYEELIALLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVLTMMS
HPTDAWKEVQFKDIIAKVANVELYYKSLSFYLDYKPLLTNDLLTILSPRLDHSRAVTYFT
KMNQLKLVKPYLRSVQSHNNKGVNQALNNLLTEEEDYQGLRTSIDAYGNFDTIVLAQRLE
KHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFLEE
GRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEVAEKVTMD
KLEESESQRKTEEKVPEPTPIVFGQQLMLTAGSAPVAPQPGYPGGYGYAAPGYPTQPPYG
YNM
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagctgcagaacctaggggtg
aatccggccaacatcgggttcagctacctgaccatggagtctgacaaattcatctgcatc
cgggagaaggtgggtgagcaaaaccaggtggtgatcatagacatggctgaccccaataac
cccagcaggcgacccatttccgctgacagcgccattatgaaccctacaagcaaggtcatc
gccctgaaagctgctaagtgcctgcagatcttcaacattgagatgaagagtaagatgaag
gctcacaccatgacagaggaagtcatgttctggaagtggatctctgtcaacaccgtcgcc
ttggtgactgaagcggccgtctaccattggagcatggagggggactctcagccaatcaaa
gtgtttgatcggcacgccagtctggccggttgccagatcataaattacagaacagacgaa
cagcagaagtggcttctgcttatcggtatctcggcacagcaaaaccgtgtggtgggggcc
atgcagctgtactctgtggacaggaaggtgtcccagcccatcgagggacatgctgcagcc
ttcggagagtttaaggtggagggcaacaccaaagcctccactctcttctgctttgctgtg
cgcagccaggctggtggcaagctgcatatcatagaggtgggtcacccggccacagggaac
cagccatttaccaagaaggcggttgatgtgttcttccctcccgaggcgcagacagacttc
cccgtcgccatgcagattggcaccaagcatggcgtgatctacctgatcactaagtatggc
tacatccacctgtatgatctggagtcgggagtgtgtatctatatgaaccgcatcagcgct
gagaccatcttcgtcaccgccccccacgaacccacctccggcatcatcggggttaacaag
aagggacaggtgttgtcagtgtgtgtggaggaggagaacatagttaactatgccaccaac
gtgctgcagaacccagacctgggcctgaggatggccatgcgttctaacctggccggggca
gatgagttgtttgccaggaagttcaacacgctgttcgcccagggttcctactccgaggct
gccaaggtggctgcctccacaccaaagggtatcctgcgtacagcggagaccatccgtaag
ttccagagtgtgccaggccagccgggccaggcctctcccctgcttcagtactttggcatc
ctgctggacgaaggccagctcaacaagtttgagtctctggagctgtgcaggcccgtgcta
cagcagggacgcaagcagctgctggagaagtggctgaaagaggataagctggagtgttgt
gaggagcttggtgacctggttaaggcagtagatcctactctggccctcagcgtctacctc
agggccaacgtacccagcaaggtgatccagtgcttcgctgagaccggacagttccagaag
atagtgctttacgccaagaaggtgggctactctccagactgggtgtttctgttgaggaat
gtgatgcgggtcagtccagaacagggtctacagttctctcagatgctggttgcagatgag
gagcccctggccaacatcaaccagatagtggatgtgttcatggagggcagtctgatccag
cagtgcacctcattcctattggacgctctgaagaacaaccagccagccgagggacaccta
cagacacgcctactggaaatgaacctcctccatgctccccaggtggccgatgcaatcctg
ggaaaccagatgtttagtcactatgaccgagcccacatcgcccagctgtgtgagaaggct
gggctgctgcagagggctctagagcactacactgacctgttcgacatcaaaaggactctc
gtacacacacacctgctcaaccctgagtggctggtgaacttctttggcgccctgtcagta
gaggactctatagagtgtcttcgggccatgttatcagccaacatccgacagaaccttcag
ctgtgtgtccaggtggcatctaaataccacgaacagctgggaacaaatgccctggtggat
ctcttcgagtccttcaagagctttgagggtgtgttctacttcctgggttccatagtgaac
tttagccaggaccccgacgttcattttaaatacatccaggcggcctgtaagaccggacag
atcaaggaggtggaacgcatctgtagagagagcaactgttacgacccggacagggtcaag
aacttcctcaaggaggctaaactgacagaccagctgcctctgatcatagtgtgtgaccgc
tttgactttgtccatgacctggttctctacctctaccgcaacactctgcagaagtacatt
gagatctatgttcagaaggtgaaccctagccggctgccggtggtgataggaggtctgttg
gatgtagactgtgctgaagaggtcattaagaacctgatcttggtggtgagaggacagttc
tccacagacgagctggtggcggaggtagagaagaggaacagactgaagctgttgttgccg
tggctggagtctcgtatccacgagggctgtgaggagccggctactcacaatgccttggct
aagatctacatagacagtaacaacaacccggagcgcttcctgaaggagaacaccttctac
gacagcactgtagtggggaagtattgtgagaagagagacccccacctcgcctgtgtcgcc
tatgagaggggccagtgtgacctggaccttatcaaggtgtgcaatgagaactccctgttc
aagagtgaggctcgctacctggtcagacggaaagacccagaactatgggccaatgtttta
gaggagaacaacccttatagacgccaactcatagaccaggtggtgcagacagctctgtca
gagacccaggacccagaggaggtatcggtgactgtcaaggcctttatgaccgctgacctg
cccaatgagctcatcgaactactggagaagattgtactggacaactcagtcttcagcgag
caccgaaacctccagaacctgttgatcctgacggccatcaaggcagaccgtacacgtgtg
atggagtacatcaaccgcctggacaactacgacgccccagacatcgctaacatcgccatc
agcaacgagctctttgaggaggccttcgccatcttcaagaagtttgacgtcaacacctcc
gccattcaggttctgatcgagcatatcagcaacctggacagagcctatgagtttgcagag
cgttgtaatgaggctgctgtatggagtcagctggccagagcccagctccagagagacctg
gttaaagaggccatcgactcctacatcaaagctgacgacccgtcagcctacatggaggtg
gtcagcgcggccagcaagaacgataactgggaggatctggtgaagttccttcagatggct
cgtaagaaggcccgggagtcctacgtagagacagagctcatctttgctctggctaaaact
ggcagactggccgaactagatgagtttgttaacggccctaacaatgcccatatacaacag
gtgggagataggtgttttgaggagggcatgtatgatgctgccaagctgctgtataataat
gtgtccaactttgcccgcctggcatccacgctggtccacctaggagagtaccaggctgct
gtggacagcgccaggaaagccaacagcacacgcacctggaaggaggtgtgttttgcgtgt
gtggctggggaggagtttcggttggctcagatctgtggtcttcacatcgtcatccacgct
gatgaactggaggagctcatcagtgactatcaggaccggggctattatgaggagctgata
gccctgttggaggcagcattgggtttggagcgcgctcacatgggcatgttcacagagctg
gccatcctctactccaaattcaaaccccagaagatgagagaacatctggaactcttctgg
tcccgtgtcaacatccctaaggtgctgcgagcggcggagcagtcccacctgtgggcggag
ctagtgtttctgtatgataaatacgaggagtatgacaatgctgtcctcacgatgatgtca
caccctactgacgcatggaaggaggtgcagttcaaggacatcatcgccaaggtggccaat
gtggagctgtactacaaatccctttccttttacctggattacaaacctctgctgacgaac
gaccttctgaccatactgtcaccacggttagaccacagccgggcggtcacatacttcacc
aagatgaaccagttgaagttggtaaagccttacctgcggtcagtccagagtcacaacaac
aagggagtcaaccaggccctcaataacctactgacagaggaggaggactaccagggtctg
aggacatcgatcgatgcgtatggtaactttgacaccattgttctggcccagagactggag
aagcatgagctgattgagttcagacgcatagcagcatacctctacaaaggcaacaaccgc
tggagacagagcgtggaactctgcaagaaggacaaattatacaaggatgcaatgctgtat
gctgccgagtctaaggatgcagagttggctgagaccctgctgcagtggttcctggaggag
ggtaggaaggagtgtttcgctgcctgtctgtttgcctcctatgacctgctgcaccctgat
gtggtgctggagctggcctggagacacaacatcatggactttgccatgccatacttcatc
caggtcatgagggagtatctcaccaaggttgatgaggttgcggagaaggtgacgatggac
aaactggaggagtcagaaagccaaaggaagactgaggaaaaagtcccagaacccaccccc
atagtgtttggtcaacagctgatgttgacagcaggttccgctccagtggctccccagcca
ggatatccaggaggctatggatacgctgctccaggctaccccacccagcccccctacggc
tacaacatgtag
DBGET
integrated database retrieval system
