KEGG   Oncorhynchus mykiss (rainbow trout): 110536433
Entry
110536433         CDS       T07259                                 
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022  Basal transcription factors
omy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110536433 (gtf2h2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    110536433 (gtf2h2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:omy03021]
    110536433 (gtf2h2)
   03400 DNA repair and recombination proteins [BR:omy03400]
    110536433 (gtf2h2)
Transcription machinery [BR:omy03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     110536433 (gtf2h2)
DNA repair and recombination proteins [BR:omy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     110536433 (gtf2h2)
SSDB
Motif
Pfam: Ssl1 VWA_2 C1_4 VWA DZR
Other DBs
NCBI-GeneID: 110536433
NCBI-ProteinID: XP_021477874
Ensembl: ENSOMYG00000015031
LinkDB
Position
11:77695841..77700928
AA seq 422 aa
MNGKWNDCFLGLKIIQFLIELHLEVDSIKMDEEPERAKRWEGGYERTWEILKEDESGSLK
ATVEEILFQAKRKRVFESHGQVRLGMMRHLYVVIDTSRTMEDQDLKPNRLTSTLKLVEYF
VEEYFDQNPISQVGIITTKNKRAEKLTDLAGNPKKHIDALKKAKDSTCGGEPSLYNSLSL
AMQTLKHMPGHSSREVLIIFSSLTTCDPANIYELVKTLKALKIRVSVIGLSAEVRVCTVL
TRETGGSYHVILDESHFRELLMFHVKPPPATSSSECSLIRMGFPQHTIASLSDQDAKPSF
SQAHLDSTSGGPGLSMGGYFCPQCQAKYTELPVECKVCGLTLVSAPHLARSFHHLFPLEA
FQESPLLLHHTERFCEACQGELKDKSVFTCPSCNSVFCVECDLFIHDTLHCCPSCIHSRS
AP
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaatggtaagtggaatgactgcttcctgggtttaaagataattcagtttttgattgaa
ctgcatttggaggttgactcaatcaagatggacgaagagccagagagagccaagcgttgg
gagggaggttatgagcgaacatgggagatcttgaaggaggacgagtctggatctctcaaa
gccactgtggaggaaatccttttccaggccaaaaggaaaagggtgtttgagagtcatgga
caagttcgtcttgggatgatgcgtcacctgtacgtggtaattgacacctctagaaccatg
gaagaccaggacctgaaacccaaccgcctcacctctacactcaagctggtggaatatttt
gttgaggaatactttgaccagaaccccatcagtcaggtgggcatcatcaccacaaagaac
aagagagcggagaagctcactgacctggcagggaacccaaagaagcacattgatgccctg
aagaaagcaaaggactctacgtgtggaggagaaccctctctatataactccctcagcctg
gccatgcagacgctcaaacacatgccaggccacagcagcagagaagtcctcatcatcttc
agtagtctcaccacatgtgacccagctaacatctatgagctggtcaagactctgaaggct
ctgaagatccgtgtgtctgtgattggcctgtcagccgaggtgcgtgtctgcacggtgctc
accagagagaccggggggtcgtaccatgtgatcctggatgagagccacttcagggagctg
ctgatgtttcatgtgaagcctcctcctgctacctcctcctccgagtgttccctcatacgc
atgggtttcccccagcacaccatagcctctctatcagaccaggatgccaagccttctttc
agccaggcccatctggacagcactagtggtggtcccggtctgtctatgggagggtacttc
tgtccacagtgccaggccaagtacactgagctacctgtcgagtgtaaagtctgtgggctg
acacttgtctccgctcctcatctggctcgctccttccaccacctcttccccctggaggcc
ttccaggagagtcctctgctgctgcaccacacagagaggttctgtgaagcctgccagggg
gagctgaaagacaagagtgtgttcacgtgtccgtcgtgcaacagtgtgttctgcgtggag
tgtgacctgttcatccacgacacgctgcactgctgcccctcttgcatccacagccgcagt
gccccctga

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