Oncorhynchus mykiss (rainbow trout): 110536748
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Entry
110536748 CDS
T07259
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110536748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110536748
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110536748
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110536748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
110536748
NCBI-ProteinID:
XP_036796347
Ensembl:
ENSOMYG00000001686
LinkDB
All DBs
Position
2:18545006..18556597
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AA seq
959 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSS
ATCTAENSEDDKKRGRSTDRDVSQSPAKNGTSSLLLSFSSSANSGSSSSSSLVSMAAIVG
GNPGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLQQPQQPQTKPCTPSPPSHPLLSTAP
SLPTPTTPISASPNSLPQVSPGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSAS
LNTMAGLLSGSTHAPYAQAAALGGLGLSTTTQSSVSLESSSIPTSCSSGVTTNGAGTGLG
LLGSSPAHGSLTGGILGLVPGQSVIPGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGGV
VGSNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQHMDNG
PSLISSITLPPSSPSPSFSDSITGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQ
APEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGS
SAAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERI
RQYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggataat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccaacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatcctcg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagg
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgttgtccttttcctcg
tccgccaattccgggtcctcttcttcctcctctcttgtatccatggccgccattgtcgga
ggcaaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtacaa
caacatcagcctcaacctccacagcaaccagtcctgcagccactgcaacaaccacaacaa
ccccaaacaaaaccttgcacccccagcccacccagccacccccttctctccaccgccccc
tctctccccacacccaccacacccatctcagcctccccaaactccctgccccaggtctcg
cctggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatg
acggggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctct
ctgaacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagcc
gcgttgggaggcctgggtctgagtaccactacccagtccagtgtctcactggagagctcc
tccatccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggc
ctgctggggtccagcccagcacacggctccctgactggggggatcctgggcctggtgcct
gggcagagtgtgatccctgggccccctctgatccctctcagcccggtcggtgctgcccct
gggggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagta
gttgggtcgaacgcagcccctgccagaccgcccagtggactgaagcagaacggaagcaca
agttacagtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagccaa
tcacagagcagccagccttcctcgctgacctcctcagccagtcagcatatggacaacggt
cccagcctcatcagctccatcaccttgccccccagctctccgtccccctcgttttccgac
agtatcaccggtggagggagtctcctcaacggaccccactcctacacacaggcctctgag
ggcctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcag
gccccagagccgccaggggccatggctacagccactaacacacgaaagagaaagcagtgt
caggccccggagcctctgagttctctgaaggcaatggctgagagagcagcattaggatca
ggtctggatggagagatccccaacctgcacctcacagacagagacatcttctctggttcg
tcggctgcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatcccc
ccttccctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccaa
cagaccatgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatc
aggcaatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccc
caccactcagactctatagagttctaccagagactgtccacagagacgctcttcttcatc
ttctactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcag
tcgtggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagact
atcactgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcag
aggaagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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