Oncorhynchus mykiss (rainbow trout): 110536793
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Entry
110536793 CDS
T07259
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110536793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110536793
03041 Spliceosome [BR:
omy03041
]
110536793
03009 Ribosome biogenesis [BR:
omy03009
]
110536793
03016 Transfer RNA biogenesis [BR:
omy03016
]
110536793
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110536793
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110536793
Spliceosome [BR:
omy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110536793
Complex C
U4/U6.U5 tri-SnRNP related factors
110536793
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
Pre-60S particles
Helicases
110536793
Transfer RNA biogenesis [BR:
omy03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110536793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
110536793
NCBI-ProteinID:
XP_036792879
Ensembl:
ENSOMYG00000025989
UniProt:
A0A8C7RSG5
LinkDB
All DBs
Position
12:14016050..14071100
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTSSTKKKPPIPEKGKATSNNDKGGTNEPPAAKTKREADNDGTD
EVVFGKKAKLETVSTEEINLADCMPKVKVEPVETVEGCNHEVALPANEEYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALRGKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDTKGRKG
GTRGPSNVFKIVKMIMEKNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKQLVEEVFNN
AVDCLSDDDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMG
KLEKMYNAIEIPNEESVVTYYKIRQQLAKLGKEIEEFVHKPKFCLPFLQPGRLVKVKNED
VDFGWGVVVNFSKKSNVKASTGDADPLYVVEVLVHCSQESVKNAATEAAKPAATGEKGEM
QVVPVMLRLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKIIQKVEAFEHRMYSHPMHSDPSLEAVYSLCEKKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQVT
ALLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLDKFRPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFADG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgttcgatgaagaacaaacatcttca
actaaaaagaaaccaccaatacctgaaaaggggaaagcaaccagtaataatgataaaggc
ggaacgaacgagccccctgctgccaagaccaagagggaagcagacaacgacgggacagat
gaggtggtgttcgggaaaaaggccaagctggagactgtctctacagaggagatcaatctt
gccgactgcatgcccaaagtgaaggtggagccggttgagacagtggaaggatgcaatcac
gaggtggctctgccagccaatgaggagtacacacagcttaagcctcgtgtggggaaagcg
gccaaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgtatagac
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagccctgagagggaagcagagggtaatcttcaccagccccatcaag
gccctgagtaaccagaagtacagagagatgtacgaagagttccaagatgttggcttgatg
accggtgatgtcaccatcaaccccactgcctcctgccttgtcatgaccactgagattctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagagatgcagagcgtggtgtggtctgggaggagaccatcatcctg
cttcctgacaatgtccactatgtcttcctgtccgccactatccccaacgccaagcagttt
gctgagtggatctgccacctccacaaacagccctgtcacgtggtgtatactgactttcgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagagaggacaacttcaacacggccatgcaggtgctgagagac
acaggggactctgggggcagtagcggaggtggcaagtgggacaccaagggacgcaaagga
ggaacacgagggccgtccaacgtgttcaagatcgtgaagatgatcatggagaagaacttc
cagccggttatcatcttcagcttcagtaagaaggagtgcgaggcctacgccctgcaggtg
tccaagctggacttcaacacagatgaggagaagcagcttgtagaggaggtgtttaacaac
gctgtagactgtctgtctgacgatgacaagaagctgcctcaggtagagaatgttctacca
ctactgaagagaggtatagggattcaccacgggggactgctccccatcctgaaggaaacc
attgagatcctcttctctgaggggctaattaaggcgttgtttgccacagagacctttgcc
atgggcatcaacatgcctgcccgcaccgtcctgttcaccagcgcacgcaagtttgacggc
aaagacttccgatggatcacgtctggcgagtacatccagatgtctggccgagctggcagg
agagggatggacgagagaggtattgtcatcttcatggttgatgagaagatgagccctgca
gtagggaaacagctgctcaagggctcagctgaccctctcaacagtgccttccacctcacc
tacaacatggttctcaacctgctgcgggtggaggagatcaaccccgagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggcgtcgtagagaagatgggg
aagctggagaagatgtataacgccatagagatccccaacgaggagagtgtggtcacttac
tataagatccgccagcagctggctaaactgggcaaagagatcgaagagtttgtccacaaa
cccaagttctgccttcctttcctccagcctggtagattggtcaaggtcaaaaacgaagat
gttgactttggatggggcgtagtcgttaatttctcaaagaagtcaaacgtcaaggccagt
acaggtgatgcagaccctctgtacgtggtggaggtgctggtccactgtagtcaggagagt
gtgaagaatgcagctacagaggctgctaaacctgctgccactggggagaagggtgaaatg
caggtggttcctgtgatgctccgcctcttgacctctatcagttcagtccgtctctacatc
cccaaagacctccggccttatgacaacagacagagcatgctgaaatccatacaggaggtg
cagaagcgcttcccagacggagttcccctgctggaccccattgatgacatgggcatcaag
gacccaggcctgaagaagatcatccagaaggtggaggcattcgaacacaggatgtactcc
caccccatgcactccgaccccagcctggaggctgtctactccctctgcgagaagaaagcc
ctgattgcaggggacattaaaggggccaagcgggagctgaaaaaggctaggaccgtcctg
cagatggacgagctgaagtgcaggaagcgtgtcctgagacgtctggggttcgctacttcc
tctgatgtcatcgagatgaagggcagagtggcctgtgagatcagcagtgctgatgagctg
ctgctgactgagatggtgttcaacggtctgttcaacgatctgactgcagaacaggttact
gctctgctcagtgtcttcgtcttccaggagaatgcgaatgagatgcccaagctgacagag
cagctggctggaccactgagacagatgcaggagtgtgccaagcgcattgctaaggtgtct
gcagaggctaaactggaggtggatgaggagacctacctggacaagttcaggcctcacctg
atggatgtggtctacacctgggctaacggctccaccttcgctcagatctgcaagatgacc
gacgtcttcgaaggtagtatcatccgctgtatgcgtcgcctggaagaactgctgcgtcag
atgtgtcaggcagccaaggccatcggcaacaccgagctggagaacaagtttgcagatggt
atcacaaaaatcaagagggatattgtgtttgctgctagtctatatctgtaa
DBGET
integrated database retrieval system
