Oncorhynchus mykiss (rainbow trout): 110536956
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Entry
110536956 CDS
T07259
Name
(RefSeq) UV excision repair protein RAD23 homolog B
KO
K10839
UV excision repair protein RAD23
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03420
Nucleotide excision repair
omy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110536956
09124 Replication and repair
03420 Nucleotide excision repair
110536956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
omy03051
]
110536956
03400 DNA repair and recombination proteins [BR:
omy03400
]
110536956
Proteasome [BR:
omy03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
110536956
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
110536956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
UBA_3
CUE
Ubiquitin_4
Dsc3_N
OTU1_UBXL
RAP1
Motif
Other DBs
NCBI-GeneID:
110536956
NCBI-ProteinID:
XP_021478313
Ensembl:
ENSOMYG00000017033
LinkDB
All DBs
Position
12:complement(11212672..11231102)
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AA seq
381 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDEEETVKTLKERIENEKGNDGFPVAGQKLIYAGKILNDDTAIK
DYKIDEKNFVVVMVAKPKAAPAAAQPSGSAATTSSSTTAPTVPTAASPGSDNPPEGSKPA
EERPCSTSAPASTPTSSSGLLTNVNMFEEATSALVTGQSYENMVTEMMLMGYEREQVVAA
LRASFNNPDRAVEYLLTGIPAGEESHAGADPVVPSVGGGTPALNTGSMTTPASVATGANP
LGFLVNQPQFLQMRRIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPAQEG
GQGGGGGGGGGGGGGGGGVGVGGEAGSGMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF
ACEKNENLAANFLLQQNFDDD
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcactttgaaaaccctccagcagcagacatttaaaatcgacatagacgaagag
gagacggtaaaaaccttaaaggaaagaattgagaatgagaagggaaacgatggttttccg
gttgcagggcagaaattgatatatgcagggaaaatcctaaatgatgacactgctatcaag
gactataagattgatgagaagaactttgtggttgtcatggtggcaaagcctaaagcagcc
ccagcagctgcccagccttccggttctgccgccaccacctcctccagcactacagccccc
actgtacccactgctgcctcgccaggctcagataacccaccagaggggtccaaaccagcc
gaggagaggccctgcagcacttcagcaccagcatcaacccccaccagttcctctggtcta
ttgacaaatgtgaacatgttcgaggaggcaacttctgctctggtgacaggccaatcgtat
gagaacatggtgacagagatgatgctgatgggctacgagagggagcaggtagtggcagcg
ctcagagccagcttcaataacccagacagagctgtggagtacctgcttacagggatccca
gctggggaggagagccatgcgggtgctgacccagtggtgccctctgtgggtggaggaact
ccagctctcaacacaggcagcatgacgacccccgccagcgttgcaacaggagccaatcct
ctggggttcctggttaaccagcctcagttcctccagatgagacggatcatccagcagaac
ccctctctgctccctgccttactacagcagatagggagggagaacccccagcttctgcaa
caaatcagcagccaccaagagcagtttatccagatgctgaacgagccagcccaggagggg
ggacagggaggaggaggaggaggaggaggaggtggtggtggtggtggtggtggagtgggg
gttggtggggaggctggaagtggcatgaactacatccaggtcacaccccaggagaaggag
gccattgagcggctaaaagccctaggattcccagaaggacttgttatacaggcctacttt
gcctgtgagaagaacgagaacttggctgctaacttccttttacaacagaactttgacgac
gactag
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