Oncorhynchus mykiss (rainbow trout): 110537051
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Entry
110537051 CDS
T07259
Symbol
u2af2a
Name
(RefSeq) splicing factor U2AF 65 kDa subunit isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110537051 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110537051 (u2af2a)
Spliceosome [BR:
omy03041
]
Complex A
U2 snRNP components
U2 related factors
110537051 (u2af2a)
Complex B
110537051 (u2af2a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
AAA_8
Motif
Other DBs
NCBI-GeneID:
110537051
NCBI-ProteinID:
XP_021478446
Ensembl:
ENSOMYG00000002726
LinkDB
All DBs
Position
2:complement(19506668..19513981)
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AA seq
501 aa
AA seq
DB search
MSDFDEFERQLSENKQAQLVEHGACNARIVRSIPGNTPEKDKENRHHRRSPSRSRSRERK
RRSRDKDRRSRDRRGDSKERRPRRSSPSQQQPQEIAVSRSPHRETKKKNKVKKYWDVPPP
GFEHISVMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP
FGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGI
IFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKE
LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQITMENQAIAGLNGMQLGDKKLL
VQRASVGSKNATLTSINQTPVTLQVPGLMNSSMTQMAGLPTEVLCLMNMVAVEELVDEEE
YEEIVEDVRDECSKYGQVKSIEIPRPVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGRKF
ANRVVVTKYCDPDAYHRRDFW
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatttcgacgaattcgagagacaactgtctgaaaacaaacaagctcagttggta
gagcatggcgcttgcaacgccaggatagtgcgctcgattcccgggaacaccccggagaag
gacaaggagaaccgccaccaccgtcgctccccctctcgcagccgcagcagagagaggaag
aggaggagcagagacaaggacagacgcagcagggatcgccgtggagacagcaaggagcgc
agaccgagacgcagctcaccatcccaacaacaaccccaagagattgctgtaagtcgttcc
ccgcaccgtgaaacgaagaagaagaacaaagtgaagaagtactgggacgtccctcctcct
ggctttgaacacatcagtgtgatgcagtacaaagccatgcaggctgcgggtcagatccca
gccacggccctgctgcccaccatgaccccagacggcctggccgtgacccccactcccgtc
cctgtggtgggaagccagatgaccagacaggcccgtcggctttatgtgggcaacatcccc
ttcggcatcacagaggagtccatgatggatttcttcaacgctcagatgcgtctgggtggt
ctcactcaggctccaggaaaccccgtcctcgctgttcagatcaaccaggacaagaacttt
gccttcctcgagttccgctcagtggatgagacgacccaggccatggcgttcgatggcatc
atcttccagggacagagtctgaagatccgccgtccccatgactaccagcctctgcctggc
atgagcgagaaccccagcgtctacgtgcctggcgtggtgtccacagtggtgcctgactcg
gcccacaagctgttcatcgggggcctgcccaactacctgaatgatgaccaggtgaaggag
ctcctgacatcgtttgggcctctcaaggcctttaacttggtcaaggatagtgccacaggt
ttgtctaagggttatgcgttctgtgagtatgtagacgtcaacctgaacgaccagatcacc
atggagaatcaggccatagcaggactcaacggcatgcagctgggagataaaaagctcctg
gtgcagagagccagcgtgggatccaagaatgccactctgacaagtataaaccagaccccg
gtgacgctgcaggtgccgggcctgatgaacagctcaatgacccagatggctggcttgccc
acagaggtgctgtgtctgatgaatatggtggctgtggaggagctggtggatgaagaggaa
tatgaggagatcgtggaggatgtgagggacgagtgcagcaagtacggccaggtcaagagc
atcgagatccccagacctgtggatgggctggaggtccctggcactggcaagatctttgtg
gagttcatgtcagtgtttgactcccagaaggccatgcagggtctgacgggcaggaagttt
gctaaccgggtggtggtgaccaaatactgcgaccctgatgcctaccaccgccgagacttc
tggtag
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