Oncorhynchus mykiss (rainbow trout): 110537087
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Entry
110537087 CDS
T07259
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
omy03009
]
110537087 (ddx55)
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110537087 (ddx55)
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
Pre-60S particles
Helicases
110537087 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
DUF1340
SBF_like
YbjM
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
110537087
NCBI-ProteinID:
XP_021478527
Ensembl:
ENSOMYG00000017955
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All DBs
Position
12:complement(17269677..17275098)
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AA seq
607 aa
AA seq
DB search
MDNTTEGKWDSLPVKLNDGITQTLNELGFTHMTPVQSACIPLFMRNKDVAAEAVTGSGKT
LAFVIPIIEILIKREDKLKKMQVGALIVTPTRELALQISEVMGQFLQKFPQFRQILLIGG
SNPIEDVEKFKEQGANILIATPGRLEDMFRRKADGLDLALSVKFLEVLVLDEADRLLDMG
FEASLNVILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASCTQKTPA
RLCNYYTICRAEDKFNSLVAFLRQHKHEKQLVFFSTCACVEYFGRALEALIKSVTIHCIH
GKMKHKRNKIFSEFRSLKSGILVCTDVMARGIDIPEVHWVLQYDPPSCASAFVHRCGRTA
RIGNKGNATVFLLPMEESYVTFLSINQKCPLEQMAPVSDVVDVLPKVKALALADRAMFDR
GMRAFVSTVQAYAKHECSLIFRVKDLDFVALARGFALLRMPRMPELKGKNFPDFIETTID
TDNIRYKDKQREKLRQKLLIELKEKREERAAAPKRHNDKNKAWSRQKNRKDRRRKTAAKR
NRDEGSEMDDEDMKELLKDTRLLKRLKKGQISEEDFEKQVTAGPKSQRKTAAGPSEDPPS
SAGEEDE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggacaacacaactgaaggaaaatgggatagtttacccgttaaacttaacgacggtatt
acgcaaactctcaatgagcttggatttacacatatgacaccagttcagtctgcctgtatt
ccactgtttatgcgaaataaagatgtggctgccgaggctgtgactggcagtggaaagaca
ttggccttcgtgattcccatcatagagatacttataaagcgagaggacaaattgaagaaa
atgcaggttggtgctctgatcgtcacgccgaccagagagctggccctgcagatcagtgag
gtgatgggccagttcctccagaagttccctcagttcagacagattctgttgattggaggg
agcaaccccattgaggatgtggagaagtttaaggaacagggggccaacatattgattgcc
accccggggcgtctggaggacatgttcagaaggaaggcagacggtctggacctggccttg
tcagtcaagtttctggaggtcctggtcctggatgaggctgaccgccttctggatatgggc
tttgaggccagtctgaatgttatcctggggtacctccctaagcagcgtcgtacaggtctg
ttttcagccactcagactcaggagctggaaaagctggtgagagctggtctcaggaaccct
gtacgaatcacagtgaaggagaagggcgtggccgccagctgcacccagaaaacacctgcc
aggctctgcaactactacacaatctgcagagcggaggacaagtttaacagtctggtagcg
tttcttagacaacacaaacatgagaaacagctggtgttcttcagtacatgtgcgtgtgtg
gagtactttggccgagccttggaggccctgattaagagcgtcaccatccactgcatccac
ggcaagatgaaacacaaacgcaacaagatcttctcagagtttaggagcctaaagagtggt
atcctggtgtgtactgacgtcatggccagaggcattgatatcccagaagtccactgggta
ttgcagtacgacccccctagttgtgccagtgcctttgtgcaccggtgtggacggactgcg
cgcattggtaacaaaggcaacgccacagtcttcctgctccccatggaggaatcttacgtt
accttcctgtccatcaaccagaagtgtcctctggagcagatggccccagtgagtgacgtg
gtggatgttctgcccaaggtgaaggccctggctctggcagaccgggccatgttcgacagg
ggcatgagggcattcgtctccaccgtacaggcctacgccaaacacgagtgcagcctcatt
ttcagggtcaaagatctggactttgttgcgctggcccgtggcttcgccctcctccgcatg
cccaggatgcccgagctgaaagggaagaacttccctgacttcatagaaacgaccatagac
acagacaatatccgctacaaggacaagcagcgggagaagctgaggcagaagctgctgatt
gagctaaaggagaagagggaggaaagggccgctgcccccaagagacacaacgataagaac
aaagcctggtccagacagaagaacaggaaggaccgcaggaggaagactgctgccaagagg
aaccgggatgagggctcggaaatggacgatgaggacatgaaggagctgttgaaggacact
cgtctcctgaagagattgaagaagggacagatcagcgaggaggactttgagaaacaggtg
acagcaggaccgaagagccagaggaagacagcagcaggcccctcagaggacccacccagc
tcagcgggagaggaggacgaatga
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