Oncorhynchus mykiss (rainbow trout): 110537361
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Entry
110537361 CDS
T07259
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110537361
09122 Translation
03013 Nucleocytoplasmic transport
110537361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110537361
03041 Spliceosome [BR:
omy03041
]
110537361
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
110537361
Spliceosome [BR:
omy03041
]
Complex C
Other components
EJC/TREX
110537361
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110537361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
110537361
NCBI-ProteinID:
XP_021479012
Ensembl:
ENSOMYG00000020560
UniProt:
A0A8C7QX64
LinkDB
All DBs
Position
12:28828372..28894230
Genome browser
AA seq
1570 aa
AA seq
DB search
MATRIIPADWIKNWEKSGKHEFVQLCKNLAYKTNHDGTIKDIQAALYELCWHVIQGNFKL
DLSASVLCDMMDLRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLFFVPDAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYMCEPLTLC
HILGFKFKFNQEPNEETPTSLYHIAAALLHHNLIELEDIYVHLMPLDASIVEEHKREITE
AKQIARKLTMVVVPSEKTEDKEREKEEEKNDKAPDNQKLGLLEALLRIGDWHHAQSIMDQ
MPSFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCLLRPLKNKRAPRPAESFEDL
RRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQSEGRNDNIKDKMDTLLSCFLSIA
DQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTVD
RAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVVDSLKYLTSL
NYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTNT
LKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQIRNTKKSSQ
RLKDALLDHDLALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
LSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEKSNRQQQKVH
KYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVKKLQ
LQVQVIEENPDVPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLAK
STKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIYT
VASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATGFDGGNKADQ
LDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVLNLGQALECR
VHKICLEEKEKRPDLYALAMGYSGQLKGRKAHMVPENEFHHKEQPVRSATPVSQQNGPGT
TAKPATNASKTEEGVGEDADRAKDKSQGAAKPVNKANSTAAKVTTSNGNGAPNSTKTIKE
RDDKEKSGKEKKEKKEKTPGSTLETKGESRREKQRDERGAGGKEERAPREGKEKTPKADR
DKQKAEEKSNKEDNKAKTGNGEPKEPSRERDTGAKESKSKEKGGDRSAMSGSLKSPVPRL
ESAESERDHKRRKLETHSSPSHSSSVKDNSNEPKDSASKHHINYNSVARSKSRERETDKK
ESENTRGRSKEKKTEDKDRKDRKRDHMTTDREMSLESKRRKDENGTNSSNKHSKSASPSS
GSPVSADKEKTKRSKSSSKEKGESAKPERNSSGGKKESRHDKEKSDKKEKRDSSGGKDEK
KHHKSSDKHR
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacgtatcatccctgctgattggatcaaaaactgggaaaaatctggaaaacac
gagtttgtacaactatgtaagaatcttgcatacaaaacaaatcatgacggcacaataaaa
gatatacaggcagctttgtatgaactctgctggcatgtcatacaggggaacttcaagctg
gacctttctgctagcgtcctctgtgacatgatggatctgcgggatgacatgccatccatt
ttagcagatgttttcagtatactagacatagagaccagctctttagaggaaaaaaacaaa
cgtgaccattacacccagctagtgggagcgtgtctgttctttgtgccagatgccatcctg
aaggagaggctggacccagagaccctggagtccctgggactcataaagcaagctcatcag
ttcaaccagaaaatcgttaaaatcaagaccaaactattttacaagcagcagaaattcaac
ttgctcagggaagagaatgagggctatgccaagctgatcactgagctgggccaagacctt
tcaggcaacatcactagccacatcgtcctagagagcatcaagtccctaataggatgcttc
aacctggaccccaaccgcgttctggacatcatcctggaggtgtacgagtgtcgctctgac
caagacgagttcttcctgcccctcattaagtcctacatgtgtgaacccctcaccctctgc
cacatcctgggcttcaagttcaagttcaaccaggagccaaatgaggagacccccacgtca
ctctaccacatcgctgccgccctcttgcatcacaaccttatagagctggaggacatctat
gtgcacctgatgccactggatgccagcattgtagaggagcacaagagagaaatcacagag
gccaagcagatcgcccgcaagctcaccatggtggtggtgccctctgagaagactgaggac
aaggagagagagaaggaggaagagaagaacgacaaggctcctgataaccagaagctgggt
ctgttggaagcgctgctgaggatcggagactggcaccatgcccaaagcattatggaccag
atgccctccttctacgccacctctcacaaggccattgctctggcgctgtgccagctgctg
catctgactgtagagccactgtaccgcagagccggggtccccaaaggggccaagggatgt
ttgttgaggcccctgaagaacaagcgggcccccaggcctgcagagagctttgaggacctg
cgcagggatgtgttcagcatgctctgctacctggggccccacctctcccatgaccccatc
ctctttgccaagatagtacgcctgggcaagggctttatgaaagagtaccaaagtgagggt
agaaatgacaacatcaaggacaaaatggacacattgctgagttgtttcctgagcattgca
gaccaggtgctgctgccctcgctctctctcatggagtgtaacgcctgcatgtcagaggag
ctgtggggcctcttcaaactcttcccctaccagcacaggtaccggctatacgggcagtgg
aagaatgagacctacacaagccacccacttctggtcaaggtcaaagctcagactgtggac
agagccaaatacataatgaagcgattaaccaaagagaatgtgaaaccatctgggcgccag
ataggcaagctgagccatagcaaccccaccatcctctttgactatatcctgtctcagatc
cagtggtatgacaacctcatcggtccagtggtagactcccttaaatacctcacctcacta
aactatgacgtcatggcttattgcataattgaagcgttggcaaatccagagaaagagaag
atgaagcatgacgacactacgatctcctcctggcttcagagcctggccagtctgtgtgga
gcggtattcaggaaatacccaattgagttagctggcctcctccagtatgtgaccaatacg
ctgaaagcagggaagagttttgacctgttgattctgaaagaggtggtgcagaagatggcc
gggatcgagatcactgacgagatgacatcagagcagatggaagctatgactggaggggag
cagctcaaagcagagggtggttactttggtcagatccgtaacactaagaagtcgtcccag
cgtctaaaggatgccctgttggaccatgatctggccctgcccctctgtctcctcatggcc
cagcaacgcaacggggtggtctttctggaggggggtgagaaacacctcaaactggtgggc
aagctgtacgaccagtgtcacgacaccctggtgcagtttggtggcttcctggcctccaac
ctgagtactgaggactacatcaagcgtgttccctccattgacatcctctgtaaccagttc
cacaccccccacgatgctgccttcttcctctcacgccccatgtatggacatcagatcctg
tctaagtatgatgagctgaagaaagctgagaagagcaaccggcagcagcagaaggtccat
aagtacgtggctgcgtgcgagctggtgatgtcgccggtgcacgaggccgtggtgtccctg
cacccaccccgtgtctgggacgacctccgaccccagttctacgccaccttctggtcgctg
accatgtacgacctggctgtgccacacaacgcctacgaccgcgaggtgaagaagctccag
ctccaggtgcaggtcatcgaggagaaccctgatgtgccaatgaacaagaagaagaaggag
aaggagcgctgcacggccctacaggagaagctgcaggaggaggagaagaagcagctggag
cacgtccagagggtcctgcaccgcctcaaactggagaaagacaactggctcctcgctaaa
tccaccaagaatgagaccatcactaagttcctgcagctgtgtctgtttcctcgctgtatc
ttctctgccatcgacgcagtgtactgcgcccgctttgtggagctggtgcaccagcagaag
acccccaacttctgcaccctgctctgctatgaccgggtgttctctgacatcatctacacg
gtggccagctgcacggagaacgagtcgcgacgctacggccgcttcttgtgctgcatgttg
gagacggtgacccgttggcacagtgaccgagctgtctacgagaaggagtgtggtaactac
ccaggcttcctgaccattttcagagccacaggcttcgacggagggaacaaagcagaccag
ctggactatgagaacttcagacatgtagtgcacaaatggcactacaagctgactaaagca
tcagtccactgcttggagacgggggaatacacccacatccggaacatcctgatcgtgctg
accaaaatcctgccctgctaccccaaagtgctgaacctgggccaggcactcgagtgccgt
gtccacaagatctgtctggaggagaaggagaagaggccagacctctatgccttggccatg
ggctattctggccagttgaaaggcaggaaggcgcacatggttcctgagaatgagttccac
cacaaggagcagccggtgaggagcgccacccctgtcagccagcaaaacggccctggcacc
acggccaagcctgccaccaacgccagcaagacggaggagggcgtcggtgaggacgccgat
cgagccaaggataaatctcagggtgcagcgaagccagtgaacaaagccaacagcacagcg
gccaaagtgaccaccagcaacgggaatggggctcctaacagcaccaaaaccatcaaagag
agggatgacaaagaaaagagcgggaaggagaaaaaagagaaaaaggagaagactccaggc
agcactctagagacgaagggggagagccggcgggagaagcagagagacgagagaggagca
ggcggcaaggaggagcgggcgccacgcgagggtaaggagaagacgcccaaggcagaccgg
gacaagcagaaggcggaagagaagagcaacaaagaggacaacaaggccaagaccggcaac
ggagagcccaaggagccatccagggaacgcgacaccggagccaaggagtctaagagcaaa
gagaagggaggagacaggagtgccatgtccggatccctcaagtctccagttccccgattg
gagtctgctgaatctgagagggatcacaaaaggcgaaaactggagacccactcttcacca
tcccattcctcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcac
cacatcaactacaattcggtcgcgcggtccaagagcagagagagggagacggacaagaaa
gagtcagagaatacccggggccgttccaaagagaagaagaccgaagacaaagaccgaaag
gacaggaaaagagatcatatgaccactgaccgtgagatgagcctagaatccaaacgcaga
aaagatgaaaatggaaccaattcctccaacaaacacagcaagagcgccagtccctcctca
ggctccccagtctcggctgacaaagagaagaccaagaggtcaaagtcctctagcaaggag
aagggagagtctgctaaacccgagagaaactcctccgggggcaagaaggagtctaggcac
gacaaagaaaaatctgacaagaaggagaagagggacagcagtggtggaaaggatgagaaa
aaacatcataaatcttctgacaagcacagataa
DBGET
integrated database retrieval system
