Oncorhynchus mykiss (rainbow trout): 110537426
Help
Entry
110537426 CDS
T07259
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110537426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110537426
03036 Chromosome and associated proteins [BR:
omy03036
]
110537426
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110537426
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
110537426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
110537426
NCBI-ProteinID:
XP_021479132
Ensembl:
ENSOMYG00000031435
UniProt:
A0A8C7SQA7
LinkDB
All DBs
Position
12:complement(30648676..30672125)
Genome browser
AA seq
1828 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGATTGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTGSGFGFGTASGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTANTGGLFGATNSNPFGGASASLFGASGFTQQAAQPGT
TVKFNPATGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMA
APTGGLFGTAAAATPSTGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGTATGSLFGQQQ
QPQQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFG
NTAQTTPATGFGTGTGLFGQTNTAFGNVGTQQSLFGNKTAGFGATTTSASSFGTGTGLFG
NKSALNLGTGTNPSNFGFGPTAAGGSLFGNKTAAGGLGTGLGAGFGAAVGTGQMSLFGNN
KTLGSTLGTIGAFGPQGFSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSP
FGDSPLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSK
SQLFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNG
LSASVDEDDYVREVVEGGAEDDLEINKFYTKPSLQDTISELNAHRVGARGRNGLEVSSED
ISLGEDSIQEEREEEVQEVPPHPAGIVLCRVGYYTIPAMDELAKMVDENGVCVVENFTVG
RKGYGSVFFHGEVNATGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWP
NDKTTCTQIKNPERLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDS
DEDEEVPLKVDPKKLKTATTLPPGLQQLPPSQQQVAPQAQSTAVLELLSRMSEVDSDMAD
ITQDAPGESMLEEVGESGMGEDKGSRLGTVTPTEHNPVSASSQIASSMGINPHTLQIMKA
SLFAEDDDGDMFLEQGGMKSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDV
PFGGGLPGRLSMSRPSAVVPEPSRLSPWPSLGPSFLLPAPAAEATVRTVGARRLGGPVAP
ENSVTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDRLSGAGDKEQDQGDAGAGGFGF
LPKHAKSKLLSDSPFKVVIEQVVGLEPRDSEASQAVYQRPLEIGLKHSTISTEGACPFIQ
PQSGVAALHEYVEWITDLNQEAGAGDGVLAHWTLVWTLCEALWGRLGTTEPEPGTSGYLQ
QLERRRSFSAWLSHSATQRIEQEVGLSHGGGHVEAIFSYLTGHRISDACRLAQKSGDHRL
SLLLSQAVGSQYGRELLALQLGDWNRMQTDSFLQEERLRIFALLAGKPVWQSTDCVVNVC
SELDWKRCVAVHLWYMLPPTASIADALAKYEAAFQGSAEGQKYACAPLPPYLDQSVPLDM
EEEESKRPLYDICFHLLKLYSDRHYSLQELLDPLTVTWERLDYRLSWHLWSVLQALHYTH
LSPARQGLIHTSYAAQLESAGLWDMAIYVLLHISEDMLRERAVREMLQLHCPLLETEESA
QKERFLTERLLIPEQWLHLAKATRARRETDRHREALHLYRAGHWNLCHRLVIQHLASDCI
INDNHEYLLEFLEGLAVPERCAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDSAGYKLERL
HTEVTSLCSRIELLPCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHI
GRLPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggaccggaggatttggaacttca
tccacgtttggacaacaaaacactggctttggtgcgacgacaggtggcttcggggcctca
gcatttggggcgaccaacaacactggaggactctttggtgcgacgcagaataaaccagtg
gtgacagccaatcctcaacaaatccacactggtgcaggtagaggaggtggcctgtttggt
tccagtacgttcagccagcccgtaacgtcgtccaccggtagcggctttgggtttggcacg
gccagcggcacgtccactagcctgttcggcagcaccaacacgggcggcggtggaggactc
ttctcccagcagagcaatgctttcggagccgccaaaccagcctcctttggcacgtttggc
acgagcacggccaacaccggggggctgtttggggcgaccaactccaaccccttcggaggg
gcgtctgcctccctgttcggagcttcagggttcacccagcaagccgctcagccaggcacc
actgtcaagttcaaccctgcaacaggaagtgacaccatggtgaaagggggtgtgaccacg
agcattaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaagtcactg
gaggagctgaggttggaggactaccaggcaggaaggaaggggcccactaaccccatggct
gcaccaacggggggtctctttgggactgcggccgcagccacccccagtacgggggctgca
gggctgtttggctcctcggccaccaacacaggcttctccttcggccaggccaaaaccaac
ttcggcaccagtactggtgggtttggtacagccacaggcagtctgtttggccagcagcaa
cagccccagcaggcccagcaggcagccagcctgttcaagcccttcggtcaggccacaacc
acacccaacacaggattctccttcggcaacaccagcaccatgggccagccccaacaaacc
agcaccatggggggtctgtttgggagcaccgcggcgtcccaggcaggggggttgtttgga
aacacagctcagaccacaccagccacaggctttgggacaggcaccggtctcttcggacaa
accaacaccgccttcgggaacgtcggcacacagcagagcttgtttggtaataagacggca
gggtttggcgccaccaccaccagcgcctcgtcgtttggcacaggcaccggcctctttggt
aacaaatccgccctcaacctcggaacaggcaccaacccatctaactttggttttggaccc
actgctgctggcggaagcctctttgggaacaagacggcagcaggaggactggggaccgga
ctgggagccggctttggagcagcggtgggcactgggcagatgtctctgtttgggaataac
aagacactgggttccactctgggaacaataggagcgtttggaccgcagggattcagcaca
ggaaccagcactctgggcttcggagcacaacaacagcctgttgcgctgacggaccctaac
gcggcggcggcccagcaggcagtgctgcagcagcagatcaatgctctggcctactccccc
tttggtgactcccccctcttcagaaaccccctctctgaccccaaaaagaaggaggagcgt
ctaaagcccaccaatccggcagcccagaaggcgttgaccacgcccactcactacaagctg
acgccgcggcctgcgacacgtgtgcggcccaaagctctgacatcttcgggctcctccaag
tctcagctgtttgacgggctggatgatgatgagccttctctcaccaatggagccttcatg
cccaggaagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagc
agcccaatcaacagagacacagatgacctggcatctccaccggagtaccccctcaacgga
ctcagtgccagtgtggacgaggatgattatgtgagggaggtggtggagggaggggccgag
gatgacctggagatcaacaagttctacaccaagcccagcctgcaggacaccatctcagag
ctcaatgcccatagggtgggggccaggggcaggaatggcctggaggtgagcagcgaggac
atatcgctgggagaggactccatacaggaggagcgagaggaggaggtgcaggaggttccc
ccacaccctgcaggtatcgttctgtgccgtgtgggctactataccatccctgccatggat
gagctggccaagatggtggacgagaacggcgtgtgtgtggtggagaacttcaccgtgggc
agaaaaggttacggctcagtgtttttccatggcgaggtgaatgcgactgggctgaacctg
gatgagattgttcacttcagacgcaaagaggttatcgtctaccccgacgacaagaacaag
cctgctgagggggaggggctcaacaggcgagcggaggtgactctggatggggtgtggcct
aatgacaagaccacttgtactcagataaagaaccctgagcgtctgtctgagatgaactac
gagggccgtctggagaatgcctcacgcaaacagggcgcccgcttccttgagtaccgcccc
gagaccggctcctgggtgtttgaagtggcccacttctctaagtatggcctgcaggactct
gatgaggatgaggaagtgcctctcaaagtggaccccaagaagctgaagacggccacaaca
cttcccccggggctgcagcagcttcctccctcccagcagcaggtggcgccacaggctcag
tccacggctgtgctggagctgctgagccgcatgtctgaggttgacagtgacatggccgac
attacccaggatgccccaggggagagcatgttggaggaggttggggagagcggcatgggg
gaggataagggcagtcggctgggtactgtgacccccacagaacacaaccctgtctctgca
tccagtcagattgcctcctcgatgggaatcaaccctcacactctccagatcatgaaggca
tctctgtttgctgaggatgatgatggtgacatgttccttgagcagggagggatgaagagc
tctctagacagggcctccccgcgcatcctcctgcctggcactcagggcaggccctccatc
ggtggtctcttgcagactcgtttcagcggggcaggtctcttccctcagctccctgacgtg
ccctttggagggggccttcccgggaggctgtccatgtctcggccgtccgcggtggttcct
gagccctcgcggctctccccctggccctcgctggggccctctttcctgctgccggcccca
gcggcagaggccactgtacggacggtgggggctcgacgcctggggggccctgtggcccca
gagaactcagtcacactggggaagggccgtctgctgatggatgcagctctgttcacgggc
cggtcgttccgggttggctggggtccaggctggactctggtccactgtggagaccggctg
agtggggctggggacaaggagcaggaccagggagacgcaggagctggaggttttggattt
ttgcctaaacatgccaagagcaaactactctcagacagtccgttcaaggtggtgatcgag
caggtggttggtctggagccgcgggacagtgaggcgagccaggcggtgtaccagcggccc
ctggagattgggctgaagcacagcaccatcagtacagagggtgcctgccccttcatccag
ccccagagtggggtggccgccttgcacgagtacgtggagtggatcactgacctcaaccag
gaggctggtgccggagacggggtcctggctcactggactctggtgtggactctgtgtgag
gccctgtggggtcggctgggtacgacagagccagagcctggtaccagcggctacctgcag
cagctggagaggaggaggagcttctcagcctggctgtcccacagcgccacccagaggatc
gagcaggaggtgggcctgagccatgggggaggacacgtggaggccatcttcagctacctc
actggacaccgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgcctc
tccctgctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcgctgcag
cttggcgattggaacagaatgcagacagactcatttctgcaggaggagaggctacgcatc
ttcgccctgctcgccgggaaacctgtgtggcagtctacagactgtgtggtgaatgtgtgt
tcagagctggactggaagcgttgcgtggcggttcacctgtggtacatgcttcctcccacc
gcctccatcgctgacgccctggccaagtacgaagccgccttccaaggctctgcagagggt
cagaagtacgcctgcgcccccctgcccccctaccttgaccaatcagtcccgctggacatg
gaggaagaagagtctaaacggccactctacgacatctgtttccacctgctcaaactatac
agcgacagacactacagcctgcaggagttgttggacccgctgacggtgacgtgggagcgt
ctggactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacac
ctgagccccgcccgacagggcctcatacacaccagctacgctgcccagctggagagcgct
ggcctctgggacatggccatctatgtactgctgcacatatctgaggacatgctccgtgag
cgtgcggtgagggagatgctccagctgcactgccctttgctggagacggaggagtctgcc
cagaaagagcgcttcctcacagaaagactgctgatcccagaacagtggctccacctggcc
aaagctactagagccagaagagagacagacagacacagagaggccctgcacctgtacaga
gcaggccactggaacctctgccacaggctggtcatacaacacctagcctcagattgtatc
atcaatgataaccatgagtacctgttggagttcttggaggggctggctgttccagagcgc
tgtgctgtgatccaggactgggacacggcaggcagagtctacctggactacatcagagtc
atacagaccttacacgccatacaacagatggacagtgctggttataagctggaacgtcta
cacaccgaggtgacatcactctgcagcaggatagagctcctcccctgctccaccgccaag
gaccgcctcgcccaatcagagatggccaagcgtgtggctaacatcctgcgtgtggtgttg
agtctgcagcagggtggtgagggtggcgagatccccttgtcccagctagcgccccacatc
ggccgtctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacccaatca
tacctgagacagctcattgtcagctaa
DBGET
integrated database retrieval system
