Oncorhynchus mykiss (rainbow trout): 110537543
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Entry
110537543 CDS
T07259
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
110537543 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110537543 (rabgef1)
Membrane trafficking [BR:
omy04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
110537543 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
110537543 (rabgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
DUF2336
CID_GANP
Motif
Other DBs
NCBI-GeneID:
110537543
NCBI-ProteinID:
XP_021479336
Ensembl:
ENSOMYG00000040417
UniProt:
A0A8C7U406
LinkDB
All DBs
Position
12:37526644..37559487
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AA seq
505 aa
AA seq
DB search
MSQRKERRGIHVDQSELHCNKGCGYYGNAAWQGLCSKCWREEYQRARQKQIQEDWALAEK
LQREEEVAYASIQGAQSQPQAQPQASLAPFSKFEEKKTNEKTRKVTTVKKFFSPSSRTAP
KKENQEGKTPSPSISRQSSIETDRVSRDFVDFLKTLHKPGREVHKQSRAFIEIMANKKDL
SADELSECVQDFYQNLSDRLMTHFKGSSERVERVMDEVEKYIMTRLYKSVFCPETTDDEE
KDLATQNRIRALHWVDIQMLCVPVDEEIPEVSDNVVKAITDVIEMDSKRVPRDKLACITR
CSKHIFSAIKITKSEPASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDG
YYFTNLCCAVAFIEKLDAQSLNLDPEDFERYMSGQASPRRPEADSGWPQVDPPTGSAASS
PALSQVYQNLDLLSGLGSRQDRVLEGVQSLQRDLITWQESVEREVQEILEKYPLEIRLPT
PSAIDSDNVENDRLPPPLTPQVFAG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggaaggagcgccgcgggatccacgtggaccagtcagagctgcactgcaac
aagggctgcggttactatggcaatgccgcctggcagggcctgtgctccaagtgctggcgg
gaggagtaccagcgggcccggcagaagcagatccaggaggactgggccctagctgagaag
ctgcagagggaggaggaggttgcctatgccagcatccagggggcccagtcccagccccag
gcacaaccccaggcctctctggcgcccttctccaagttcgaggagaagaagaccaatgag
aagacacgcaaggtgaccactgtgaagaagttctttagtccctcgtcacggacagccccc
aagaaagagaaccaggagggcaagactcccagcccctccatcagccgccaatcaagcatt
gagacggaccgtgtttccagagactttgtggacttcctgaagaccctgcataagcctggc
cgtgaggtccacaagcagagccgagccttcatcgagatcatggccaacaaaaaggacttg
agtgctgacgagctgtcagagtgtgtccaagacttctaccagaatttgtccgatcgcctc
atgactcattttaaaggctcttcagagcgtgtggagcgagtgatggacgaggtggagaag
tacattatgacacgcctgtataagagtgtcttctgccccgagaccacagacgatgaggag
aaagacctggccactcagaaccggatacgggcgttacactgggtggacattcagatgctt
tgtgtgccagtggatgaggagatcccagaggtttcagacaacgtggtcaaagccataaca
gatgtcatcgagatggactccaagcgggtaccccgggacaagctagcgtgcatcacgcgc
tgcagcaagcacatcttcagcgccatcaagatcacgaagagcgagccagcctcggccgac
gacttcctgcccaccctgatctacatcgtgctgaaagccaaccctccacgcctgcagtcc
aacatccagtacatcacccgcttctgcaaccccagcaggctcatgactggagaggacgga
tactacttcactaacctgtgctgtgcagttgccttcatcgagaaactggacgcccagtct
ctcaacttggacccagaggactttgagcgctacatgtcgggccaggcctctcctcgcagg
cctgaggcagacagcggctggccccaggtggaccctcctactggttctgccgcctccagt
cccgccctatcccaagtctaccagaacctggacctcctgtctggcctggggagccgacaa
gacagggttctggagggggtgcagagcctgcagagagacctgatcacctggcaggagagt
gtggagcgagaggtgcaggagatcctggagaagtacccgctggagatccgcctgcccacc
ccctccgccattgactcagacaacgtggaaaacgaccggctgccaccaccactgacaccc
caggtgtttgctgggtaa
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