Oncorhynchus mykiss (rainbow trout): 110537642
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Entry
110537642 CDS
T07259
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110537642
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110537642
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
110537642
NCBI-ProteinID:
XP_021479510
Ensembl:
ENSOMYG00000044913
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Position
12:complement(43920894..43945854)
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AA seq
893 aa
AA seq
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MKGGGRGKEPPVEVEVSGKRPKRKCLQWHPLLSKKALDFSEEEEEEDEEELEKPLLVRES
RGPEVACGGPMEVEEDSSEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW
AVLEPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPCHTVSNARKKVWSFPSNS
PKGCATAKKVPKTDSTPQLNFAMADPTKMGGLSMLLLAGEHALTAREISSSSSKSGATDV
TKHPENSSLFQLAELSSSTLQPSLTDTAGKGKPLSRGDQAETWSGTSQQGKSDAPKINVK
APLFQLAEQISSDSSQSTAPEGKQCSQSALFQLAEMCLASEAGKMETQDDTCAPHIKTET
VVKEDTGGNITDFPLSSPPSSSTSSSSTPTNASPPLLSGQAASVKKKKKKKKKQEATARE
PPKAVDKDKIPRPGSPKKTLKKRPSSESELESLLYTIEAVAKGAWGDAEEDIPKKKASTA
VITIPREPSSPKKKSKAKRPLKAKEEDEMEEDKEDGSRTELPSTVETAANLASPKTEAEE
ASIGSSPAGTEKPTAPPSPPHKVEEKQREAEANAEGCGSRKSERSCKGALYKTLVSEGML
TSLRANVDRGKRGSFRSGSDEGGWTDETWAFSQMGPTNPKKLKKSKSKDETAPGLGKLEE
EFEKKFNSLPQYSPLTFDKKSTIVTKKKKTDVSTAPEEQPSKPAKGPSSSQKKTLFHKIV
SKYKQKKEKPNTVDKDIAMHSDSPMSDSAAKAKQTPAPCATATLSPEAMGTSASIPVGSQ
KRKARKSKITHLVRSADGRVSPAEEDKVRDLTPEQDDKPLQRETLCNETGCYSAPKQEEA
DRSSAPEVLPAFFSLSALAEVAAMENIHRGQRVIGDSQKEMAQTPVLISCADQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtggaggaaggggtaaggagcctcctgtggaggtggaggtgagcggcaagcgg
cccaagcgcaagtgtctacaatggcacccgctactctccaagaaggccctggacttctcg
gaggaggaagaggaggaggacgaagaagaactggagaagccattgctggtcagggagagc
cgggggccggaggtggcatgcggggggcccatggaggtggaggaggactcttcagagcag
cgggcccgccgacccatgaacgccttcctgcttttctgcaagcgccaccgttcactggtg
aggcaggagcaccctcggctggacaaccgtggtgccaccaagatcctggctgactggtgg
gctgtgctggagcccaaagagaaacagaagtacacggacatggccaaggagtacaaggat
gccttcatgaaggctaacccaggctacaagtggtgccccaccactaacaagccagtcaag
agcccctgccacactgtcagcaacgcacgcaaaaaagtgtggtctttcccttccaactcc
cctaagggctgtgccactgccaagaaagtgcccaagactgacagcacaccacagcttaat
ttcgccatggcagatcccacaaagatgggtggcctaagcatgctactgttggctggggag
catgcccttactgccagagagatttcatccagttcttcaaagtctggagccacagatgtc
actaagcaccctgagaactcctccctattccaacttgctgagctctcctccagcacgctt
cagcccagtttaacggacacagctggcaaggggaagcccttgagtcggggggaccaagca
gaaacgtggtctggcacctcacaacagggaaaatctgacgcacccaagatcaacgtcaag
gcccctctttttcaactggcagagcagatctcctctgattcaagccagtcgactgcaccg
gagggaaagcagtgtagccagtcggctctcttccagctcgctgagatgtgtttggcctcc
gaggcagggaagatggagacacaggacgatacctgtgccccacacatcaaaactgagacg
gtggtcaaggaggacactgggggcaacatcaccgattttcctctttcctctcccccatct
tcctccacttcttcctcctccacgcccaccaatgccagtcccccgctgctcagcggccaa
gcggccagcgtcaaaaagaagaagaagaagaagaagaagcaagaagctactgccagagag
ccacccaaagcggtggacaaagacaagatccctcgtccgggctcgcccaaaaagaccctc
aaaaagcgaccatcgtctgagtctgagttggagagcctcctctacactatcgaggcagtg
gctaaaggtgcctggggcgacgccgaggaggatatacccaagaagaaggctagcaccgcc
gtcattaccattccaagagagcccagctcacccaaaaagaagtccaaagccaagaggccc
ctgaaggctaaggaagaggatgagatggaggaggacaaagaggatggaagtcgcacagag
ctgccatcgacagtggagacggcagcgaatctagcaagccccaagacagaggctgaggag
gccagcatcggcagcagccccgcaggcacggagaagcccactgcccctcccagccccccg
cacaaagtcgaggagaagcagagggaagcggaggccaacgctgaagggtgtggctccagg
aagtctgagagaagctgcaagggggcgctgtacaagaccctggtgtcggaagggatgctg
acctcactgagggccaacgtggacagaggcaaaagaggctcttttcgaagtggatctgat
gaagggggctggactgacgagacctgggctttctcacagatgggacccactaatcccaag
aagctaaagaagtcaaaatccaaagacgagacggcgccaggtttggggaaactggaggag
gagtttgagaagaagttcaacagcctgccgcagtacagccctctgacgttcgacaagaaa
agcaccatcgtcaccaagaagaaaaaaacagacgttagcaccgcaccggaggaacaacct
tcaaaacctgccaagggtccatcttcatctcagaaaaagactttattccacaagattgtt
agcaagtacaagcagaaaaaggagaaacccaatactgtggacaaagacatagcgatgcat
agtgactcccccatgtcagactctgctgccaaggccaagcagacccccgccccatgtgcc
accgccacgctttccccagaggccatgggaactagcgctagcataccggtgggcagccag
aagaggaaggctaggaagagcaaaataacccacctggtgcgctcggccgacggcagggtg
tccccagcagaggaggacaaagtcagggacctgaccccggagcaggacgacaagccatta
caacgagagactttatgcaacgaaacagggtgctacagtgcacccaagcaggaggaagca
gatagaagcagtgcacccgaagtcctgcccgccttctttagcctgtctgcccttgccgag
gtggcagccatggagaacattcacagaggccagcgtgtgattggcgacagccagaaggaa
atggcccagacccctgtcctcatctcctgcgctgatcaatga
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