Oncorhynchus mykiss (rainbow trout): 110537786
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Entry
110537786 CDS
T07259
Name
(RefSeq) transcription factor SOX-30
KO
K09271
transcription factor SOX15/30
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110537786
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110537786
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
110537786
NCBI-ProteinID:
XP_021479848
Ensembl:
ENSOMYG00000016303
UniProt:
A0A8C7QAW0
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Position
12:complement(54485377..54494969)
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AA seq
639 aa
AA seq
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MFATMDRHPKRRAQMTFKKSEPSQNEDDSGPPASKKNASESEEPASSTERHRGDGEQKRP
VGRPKGSGRSGNSVSGDVQVRPQVIFKADNKWGGDGELMLTSSSHLKGAIQGQTVTFEKE
SASSLASKQSKATFDYPTTSQVLVIKEEIITTAPGQAKVKVDQEPATTHHQGCPPVAPTI
DFSKPIHVVHENGMTFTVLDGKAITLSKVPYPPLVHVNVPPPPVKVKTRGMNLTMPPSEA
ENLEVPQSIDRNGYIKRPMNAFMVWARIHRPALSKANPTANNADISVQLGIEWSKLTEEE
KRPYYVEARKLKDKHRQEFPGWIYQPRPGKRKCYPSVMSFAPEPSCCSAGTSGPAAESYP
MTMMTMANTNTSSCVPYTQATGSNDHGLQVAITAAPNASQTTSPVSIFFQTTACPHPHPT
ATTSGGKPAERKHEASHSASNPEEAPKPRKISRQQAYYNSANEMPSTSMASSSRGLQMPL
PNMAHTHMYPPSPMPHPVGLFPTPRFPFAPPYFMPGPNFYPPGSYPYLHSPYSYPVLQPQ
DFSNPMATPMATPGYPYDDNYDQHESTFSLLNRDYPFRQSGEGGQRCQGQAPTASELLGS
VPLLDVRALENVFTNSASVQEVQVPNEEDAEEVRVMRVL
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccacaatggacaggcatcccaagcgaagagcgcaaatgacattcaagaaaagt
gaaccaagtcaaaacgaagatgacagtgggccaccagctagtaagaaaaatgcaagtgaa
agcgaggaacctgcatcttcaacagagaggcatcgaggtgatggagaacagaaaagacca
gtgggtaggcctaaaggcagtggacgttctggaaatagtgttagtggagatgttcaggtt
aggcctcaagttatttttaaagctgataataaatggggtggtgatggagagctaatgctc
acaagttcatcacacctcaagggagccatacaaggtcaaacagttacatttgaaaaggag
agcgcatcatcattagccagtaaacagagtaaagccacatttgattatcccacgacatct
caagtgctggtcatcaaggaggagatcatcacaactgctccaggtcaggccaaggtcaaa
gttgaccaagaacctgccacaacgcatcatcaaggatgtccacctgtggctcccactata
gacttctccaaaccgatccatgttgtccacgaaaatgggatgaccttcacagtattggat
ggtaaagccataacgctcagcaaagttccatacccaccacttgttcatgtgaatgttccg
ccacccccagtaaaggtgaagactagagggatgaatctcaccatgccaccatcagaagca
gaaaatcttgaagtaccacagagcatagacaggaatggctacatcaagaggcctatgaat
gcgttcatggtctgggcgagaatccacaggcctgccctgtccaaggccaacccaacagcc
aataatgcagacatcagtgtgcagctaggaatagagtggagcaagcttactgaggaagag
aagaggccctactatgttgaagcacgtaaactcaaagacaagcacagacaggagttccca
ggttggatctatcagcccagacctggaaaaagaaagtgctacccttctgtgatgtccttt
gctcctgaaccatcctgctgctctgcagggacaagtggacctgcggctgagtcttatccc
atgaccatgatgactatggccaatactaacaccagctcctgtgttccatacacacaggcc
acaggctctaatgaccatggtctccaggtggctataacggcagctccaaatgcctctcag
actaccagcccagtctccatattcttccagactactgcctgcccacatccccacccaaca
gccacaacctctggtggtaagcctgcagaacgcaagcatgaagccagtcactctgccagc
aatcctgaagaagctcccaaacccagaaaaatcagcaggcaacaggcctactacaattct
gccaatgagatgccctcaacaagcatggcatccagctccagaggtctccaaatgccactc
cctaacatggctcacactcacatgtatcctccatctcccatgccacatccagtgggcctc
ttccccacccctcgctttccctttgctccgccctacttcatgcctggacccaatttttat
cctccaggatcatacccttacctacacagcccatactcctacccagttctccaaccccag
gatttctcaaaccccatggctactcccatggctactccgggctacccctatgatgacaac
tacgatcagcatgagtccacattttcccttctcaacagagactacccgtttcggcagagt
ggagagggcgggcagagatgtcaagggcaggcccccactgcctctgagctcctaggttcg
gtcccacttctggacgtacgtgccctggagaacgtcttcaccaactctgccagtgtccag
gaggtccaagtccccaatgaggaggacgcagaagaagtgcgcgtgatgagagttctctag
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