Oncorhynchus mykiss (rainbow trout): 110537882
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Entry
110537882 CDS
T07259
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110537882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110537882
03036 Chromosome and associated proteins [BR:
omy03036
]
110537882
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110537882
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110537882
mRNA degradation factors
5'-3' decay
Decapping complex
110537882
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110537882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
110537882
NCBI-ProteinID:
XP_021480011
Ensembl:
ENSOMYG00000029357
LinkDB
All DBs
Position
2:complement(22236828..22253486)
Genome browser
AA seq
486 aa
AA seq
DB search
MSTARTENPTSIMGLNKPNGQFRGPLKPVGLTPGSLATTPQPDAHQKGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFHSADPDAEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacggagaacccaacatccataatgggactgaacaagcccaacggg
cagtttagaggaccactcaagccagttggactaacaccaggatccctggcaactacccca
caaccagatgcccaccagaagggaggcaacattccccagggcagtgggggcatccgtttt
ggcgatgactggaagaagtgcctgcagcttccacagaaggactgcagatttagaacatca
gatgtgacatcgaccaaggggaatgagttcgaagactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggagaaaccatctcctgtacaggaggagagcatcccc
attgctctgtcaggaagggacatccttgcccgggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcctggagaggatagacctgaagaaggaccacatacaggccatg
gtgatggttcctacacgagagttggccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggtggggtcaaggtcatggccaccacgggaggcaccaacctgagggacgac
atcatgcgcctggacgagactgtgcatgtggtgatagccacaccaggcaggatcctggac
ctgataaagaagggcgtggccaaagtggataaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggttctcatcgaagacatcatcagctttctggct
aaggggcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctgacactgaagggc
atcacccagtactatgcctacgtcactgagaggcagaaagtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtccatcatcttctgtaactccacccagcgggttgag
ctgctggccaagaagataacccagctgggctactcctgcttctacatccacgccaagatg
atgcaggagtacagaaaccgtgtgttccatgacttcagaaacggactctgcaggaacttg
gtctgcacagatctgttcaccaggggaattgacatccaagcagtgaacgtagtgatcaac
tttgacttccccaagaatgctgagacgtacttgcatcgcatcggcagatcagggaggttt
ggtcacctgggtctggccatcaacctgatcacctctgaggaccgcttcaacctgaagtcc
atcgaggaccagctggtgaccgacattaagcccatccccggcagcatcgacaagggcctg
tacgtggcggaattccactctgccgacccagacgcagaagacgagatcagaggcaaggac
ggcgagttaagtgcagcataa
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integrated database retrieval system
