Oncorhynchus mykiss (rainbow trout): 110538359
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Entry
110538359 CDS
T07259
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110538359
03036 Chromosome and associated proteins [BR:
omy03036
]
110538359
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110538359
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110538359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
110538359
NCBI-ProteinID:
XP_021480798
Ensembl:
ENSOMYG00000033006
UniProt:
A0A8C7SY06
LinkDB
All DBs
Position
12:75792255..75821063
Genome browser
AA seq
1929 aa
AA seq
DB search
MEDKKKKKEDKKKREASQKVTEQKVKVPESTKASSTQSLATPGSVSPSPGPTPPSSPCPA
AGFAVPPGGNNANRAAVANGQPPTGTQRYMPREVPPRFRCQQDHKVLLKRGQPPLSCMLL
GGVSGRGDAPPLSQGDAPNATTSGSTDPNLGSPSPSPPHSSPSSSVAASSTYANSTWGVG
SGSQPPSQGWEKVIVDGSDLEEWPSIVGGDRVGTELDGPNNSSASRTDKCTQQHLRTGGA
RAGSSDSPSPPHSSPSSLTECVLSGVVWGTSSQSGIGVAAAATAEGPVLNNSKVSFLPGT
QESPLRVNSGIPGANFNPNANPSAWPALVQDGTTGVGAATTEAVPSSITTSFSASTTHTH
PLSSVNQASYQHQLHEMPASDGEHLHGDWGGLGPELGEGPNQGGRDLVDSGVVGGSEHLS
ASSSSSTTSSSSWRALPPPSNLNTGASKTDGWDRVGGDTAQEEEKAGLAGDEEWVRGNDV
SSNTPVVSQGAWDGATEEGWGGTQGSTDVVSGSSNPAIGSSGGGESSSSSGGSSGGGGGG
GGGGGISQDSASPTFATMTTAWDNQKGVDAVGEWAGQGGRGSGDPSSSSGGGSRAGSHNR
NHEHSRHRSSNPPPNPEVALQSMLSRSDLDPRVLSNTGWGQIQVQQNVAWDLDTGAASQN
EGSSSPAFPSQAVSSTGRASTYPASNSTMTTDPSAGAHMPTMITGPGPVPSKGGWDDESN
CAPPSNMRNSAPSRMPVKDIDGSQGKTSGAWGDVSTSESHGKGWGSEEQEGRDRRGGGGS
NWKDFGEQGGGRESGWGGGQEEKGTAGGWKEMGREGGGWGQRGGGNWAQREPKTVSGGWG
EGRGRGEGNTDKGSWGNIDEGGPQRSWGSGGDMGGKPHQDWCMKPHSPQIPNSQAATLKA
PNQQLHQSQTQQPPGGLGRSGGPPTQNQNSGWTSGPIPQIPVGPAEAPEPSGWEEPSPQS
ISRKMEIDDGTSAWGDPTCYNSKNVNLWDKNSAPSGQPPPLQGQTQQGPPTSVQQPPPRR
QPAIPANRDSNPGNAPGMGPGMWGGGGNLVGQSVDNGTASWGQTSDAPSGWGDPDNSSKT
AGWGNPSSKSGSKSVQESWGKGEGPVPASRHSSWDEDEDVGGVWNSTGSQTSSNYNSGGW
GQGPGGKRGNIKGGGGENWMNPMTRQFQNMGLMGEDLSLDKKLEGDKRGMNDYSCEMRRG
GRGGGGYRMPSSKDMGPGDMGPYSDKMGGHGLFGGSGGMPPSRGMRQPGMHPMNPSQGLR
GQVPHQFLSAQVPGPMLKQIHSPGSSVGGVGVGGGVFPPQLSPQQLAVLSNIYPHVQQFH
LACQLLLQQQQQQQLLQNQRKLPQPIRQQTDPQQLARIMAILQQQRQQQQQGVVGGGSGS
SKLSPSLGGAPKQPMADSMPHPGMGGPLSDLHAKTQAMYSGLAPGGNLSGLELGSMVGGV
KDGGGQQSRFKWMMEGHSPAPSPPDTAHHKNGPLPMPMKVREGSPYSQYELLGVDGLGMT
PQGPSDNWHRIPGSKMGTMTGTSSWPPEFQPGVPWKGIQSADPESDPYMTPGSVLGSHGP
SSLSDSDHQLLRDNTGPNPSLNTLLPSPGAWPYSASDNPLGNAQSTAKYSDYKPSWPPEP
IGHNKPWKTSRISSQLPRPPPGLTSQKLASTSLWGSGAPRLTRGWGEGGGSQDSRFGTGS
AWNDGVASRGSCWLLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSTRQEA
AKAQGALHMCVLGNTTILAEFVSEEEVARYFAHSQVGGAEGASPGAGAAQGSSGTHTVVG
NSGGGSPGNERAGNNLGGNSGGGGVLGSVGPSSSGWQSLDGTGSSPEATSAQGPGLGIFA
QWSANGAGKGVGGGVGRVEAGRSGLWGGVTPGYSSSSLWGAPQMEDRHQMSSPAALLPGD
LLGGGTDSI
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaagaagaaagaggataaaaagaaaagggaagcttcccagaaggtg
actgaacaaaaagtcaaagtgccagaatcaaccaaggccagctccacgcagtcactagcc
actcctggctctgtgtctcccagccctggccccactccaccatcgtccccctgccctgca
gctgggttcgctgttcctccgggtgggaacaatgcaaaccgggcggctgtggccaacgga
cagccccccaccggaactcagcgctatatgcccagagaggtgcccccacgattccgctgc
cagcaggaccacaaagtgcttctgaagaggggccagccaccactgtcctgcatgctgctg
gggggagtgagcggtaggggagacgcaccccctctttcacagggagatgcccccaatgca
accacatctggatccacagatcccaatctgggttcaccttctccttcaccccctcactcc
tcaccctcatcttcagttgctgcttcttcaacttatgcaaattccacatggggggtgggc
tctggcagccagcccccttctcagggctgggagaaggtgatagtggatgggagtgacctt
gaagagtggcccagcattgtgggtggggatagagtgggtaccgagctggatggccccaac
aacagcagtgcctcacggactgacaaatgcacccaacagcatctgaggacaggaggcgca
agagctgggagttcagacagtccctccccaccccactcttccccctcgtcactcactgaa
tgtgtcctgtctggtgtcgtgtggggcacttccagtcagtctggaattggagtggccgca
gcagcaacagcagaggggccagtgctcaacaattccaaagtctcctttcttcctgggact
caggagagccctcttcgtgtgaacagtgggattcctggtgccaacttcaaccctaatgcc
aacccttcagcctggcctgcccttgtgcaggatggaacgacaggggttggtgcagctacc
accgaagctgtgccctcatccatcacaacatccttctctgccagtaccacccatactcat
ccactctcctctgtgaatcaagctagctatcagcaccaactccatgaaatgcctgccagc
gatggagaacatctccatggtgactgggggggcttggggccggagcttggagaaggacca
aatcaaggaggcagagaccttgtggacagtggggttgttggagggagcgagcatctctct
gcctcgtcatcctcctccacaacctcttcctcttcatggagagctttgcctcccccctct
aacctcaacacaggtgcctctaagactgatgggtgggacagagtagggggagatacagct
caggaggaggagaaagctgggttggcaggagatgaggagtgggtcaggggaaatgatgtt
agctcaaataccccagtggtatctcagggagcatgggatggggctacagaggagggttgg
ggcggtacacaggggtcgacagatgtcgtcagtggttccagcaacccggcaataggaagt
agcggtggaggcgagagcagcagcagcagtggaggtagtagtggtggtggtggtggtggt
ggtggtggtggcggcatatcccaggattctgcctcaccaacatttgctactatgacaaca
gcttgggacaatcagaaaggggttgatgctgtgggggaatgggcaggtcaaggtggcaga
ggaagtggagacccctcatcctccagtggaggagggtccagagctgggagtcacaatcgg
aaccatgagcattcccgccaccgctccagcaacccaccccccaaccctgaagtggcctta
cagagcatgctcagccggtcggacctggatcccagggtgctgtccaacactggatggggg
cagatccaggtacagcagaatgtggcctgggacctggatacaggagcagcaagtcaaaat
gagggaagcagttctcctgcatttccatctcaagctgttagttctactggtcgggcatct
acttaccccgcaagcaacagcacaatgactactgatccatctgctggggcccatatgcct
actatgatcactggtcctggccctgtaccttcaaagggcggctgggatgacgagtcaaat
tgtgctccaccatccaacatgcggaattctgctccctccaggatgccagtgaaagatatt
gatggcagccagggaaagacgagtggagcctggggtgacgtcagtacttcagagagccat
ggcaaaggctggggcagtgaggagcaggaggggagagaccgcagagggggcggaggaagt
aactggaaagattttggagaacagggtggcggaagagagagtggctggggaggtggtcag
gaggagaaggggactgcagggggttggaaagagatgggtagggagggaggtggatgggga
caaagagggggaggcaactgggcgcagcgtgaacccaagacagtcagtggaggctggggg
gaagggaggggcagaggtgaaggcaacacggacaaaggatcttggggtaacatagatgag
ggaggcccacagaggagttggggaagtggaggtgacatgggcggcaaaccgcaccaggac
tggtgcatgaagccgcattcaccacagataccaaacagccaagctgcaacactgaaagcc
ccaaatcaacagctacaccaatcacagacccaacagccaccaggaggcttgggcaggtca
ggaggtcctcccacccagaaccaaaactcgggctggacttctggccccatccctcagatc
cctgttgggcctgctgaggcccctgagcccagcggttgggaggagccctccccacagtcc
atcagccgcaagatggagattgatgatggcacttcagcctggggcgatcccacctgctac
aacagcaagaatgtgaacctgtgggataaaaacagtgccccctctggtcagccaccacca
cttcaaggccaaactcaacagggtccacctacatccgtacaacagccaccaccaaggaga
cagcctgcgatcccagctaaccgggactcaaaccctggcaatgcacctggaatgggccca
ggtatgtggggagggggtggcaacctcgttgggcaatctgtggataatggcactgcttcc
tgggggcagacttctgatgcaccatctggctggggagacccagataactcaagcaaaact
gctggttggggaaacccctcatctaaatctggttcaaagtcggtgcaagagagctggggc
aaaggagagggcccagttccagcctctcgacactccagttgggatgaggatgaggacgtt
ggtggagtttggaacagcacaggctcacagaccagcagcaactacaactctggtggctgg
gggcaaggccccgggggaaagcgaggcaacatcaagggtggtggtggagagaactggatg
aacccaatgacacgacaattccaaaatatgggactcatgggtgaggacttgagtcttgat
aaaaagttggaaggagataagagagggatgaacgactacagctgtgaaatgcggagagga
ggaagaggtggcggaggttaccgtatgcccagttccaaagacatggggcctggagacatg
ggaccttacagtgacaagatgggtggtcatggtttatttggtggcagcggtgggatgcct
ccgtctcggggaatgcgccagcctgggatgcatcccatgaacccctcccaagggttacgc
ggacaagtccctcatcaattcttgtctgcgcaggtgccgggtcccatgctaaagcagata
cactctcctggcagcagtgttggaggagtaggtgtcggaggaggggtgttcccacctcag
ctctcgccacagcaacttgccgtgcttagtaacatttaccctcatgtgcagcaattccac
ctggcttgtcagctccttctgcagcagcagcagcagcagcagctcctgcagaaccagagg
aagttgccccagcctatacgccagcagactgatccacagcagctggctaggatcatggct
attctgcaacaacagagacagcaacaacaacagggagtggtaggcggaggcagtgggagc
tccaaactgtccccatctcttggaggggcaccaaaacagccgatggcagactctatgcct
caccctggtatgggtgggcccttgtcagatcttcatgccaaaacacaggcgatgtactct
ggtcttgctcccggaggcaatctgtctgggctggagctgggctccatggtggggggggtg
aaggatggaggagggcagcagtcccgcttcaaatggatgatggagggtcactctccggcc
ccctctcccccagatacagcccatcacaagaatggtcctttacccatgcccatgaaagtt
cgagagggctccccatattcacagtatgagttgctcggagttgatgggttgggaatgacc
cctcagggcccttctgacaactggcaccgtatccctggaagcaagatgggcaccatgact
gggacatccagctggcccccagagttccagcctggagtgccctggaaaggcatccagagt
gccgacccggagtcggacccatacatgacccctggcagtgtgctgggctcccatggaccc
tccagcctcagtgactctgaccaccagttactgcgagacaatacagggccaaacccctcc
ctcaacaccttgctgccttcaccaggtgcctggccctacagtgcctcagacaaccccctt
ggcaatgcacagagcacagcaaagtactctgactacaaacccagctggcccccagagccc
attggacacaataagccgtggaagaccagtcgcatcagttcccagctgccacgcccccct
cctggactgaccagtcagaaactggcctcgacatccctatggggcagcggagccccacgt
ttgaccaggggctggggagagggcgggggcagtcaagattcaagatttgggacaggctca
gcgtggaatgatggtgtggcctccagaggcagctgctggctactgctcagcaatctcacc
cctcagattgacggttccacgctacggactatctgtatgcagcacggccccctgctgacc
tttcacctcggcctgacccagggcagcgccctgattcgttacagcacacgtcaggaagca
gccaaggcccagggtgcactgcacatgtgtgttctggggaacaccacaatcctggcagag
tttgtgagtgaggaggaagtggctcgctattttgcacattcccaggttggaggtgcggag
ggggccagcccaggggcaggggcggcccagggctcgtcaggaacgcacacagtggtgggc
aacagcggagggggctccccggggaatgaacgagcaggaaacaatttgggtggaaacagc
ggtggaggaggggttctgggtagtgtggggccttccagctctggctggcaaagtttggat
ggtacgggcagctctccggaggccacctcagcccaaggtcctgggcttggtatttttgct
cagtggagcgccaacggggctgggaagggggtagggggtggggtgggacgggtagaggca
gggaggtctgggctctggggtggtgtgaccccaggttactccagcagcagcttgtggggt
gcaccccaaatggaggacaggcaccaaatgagcagcccggctgccctgttgcctggtgac
ctgctgggaggaggcactgactccatctga
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