Oncorhynchus mykiss (rainbow trout): 110538393
Help
Entry
110538393 CDS
T07259
Name
(RefSeq) zinc finger BED domain-containing protein 4
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110538393
04121 Ubiquitin system [BR:
omy04121
]
110538393
Transcription factors [BR:
omy03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
110538393
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
110538393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
Gly_radical
DUF659
DBD_Tnp_Hermes
zf-C2H2_12
DUF5371
Motif
Other DBs
NCBI-GeneID:
110538393
NCBI-ProteinID:
XP_021480860
Ensembl:
ENSOMYG00000039615
UniProt:
A0A8C7TM82
LinkDB
All DBs
Position
12:74930862..74933801
Genome browser
AA seq
648 aa
AA seq
DB search
MTEFKRAFSLVWDHFTLVTPNKVQCALCSQRLSFNKNTSAMLRHLRSRHPSEAWYSNSTS
GAHSSTSNSTSGVHSTFSNSIISSAGVHSSFSGTTGLNSMFTNNAAAGHHIQVRTTRQED
LDDALVNMLVKDTQPFSVVEEEGFAAFVQKLDPSYNLPNKQALKKMVGSRCEFINDNVVS
QMVISDFVSLTSDMWTSIDKHSYISVTGHLVAENAQLSTFLLGISKLPENHKVIHIEEAK
NQLVASWGLHSRVAAFVTENSDNMVATVQKLGILQLPSFAHVLNLVIKRSMEATLELQDI
RSQARAIVSFFKSNQNAEMRLAEVQGQLGRPEQKLIQEVDSRWNSSFSMLERVFDQRESV
AAALSTLDTDIIPLGSADYEVIHQCLGVLGSFNQATAELASEKRVSASKVIPLVRMLKIT
LEKKHGAIIHPTATQLASNLQRELQTSCSMVETEPILALSALLDPRFKMLAFGNQGYAQE
AVKLLTSECASLIRINPDKDDTLPPSTTGSTTPPPTSPHTSWAMETASVSMATSPSKSHD
GGLWEMFDSKVGETQSVQSSTADAAVEVQHYLSDPYLNRVENPMHYWEKHSKVYPHLFQL
ARKYLSVPASSVPCERIFTKAGDVFNKKRSCLSMKAVEQIMLLNKGLV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgactgagtttaagagagccttctcactggtgtgggatcacttcactctagtgacaccc
aataaggtccagtgcgccctctgttcacaacggcttagcttcaacaaaaacacctccgcc
atgttaaggcacctaagatcaaggcacccaagcgaggcctggtacagcaactcaacatct
ggagcccactcaagcacaagcaactcaacatctggagtccactcaacgttctctaactca
ataattagtagtgctggagtccactcatcgttctctggtactacaggactaaactcaatg
tttacaaacaatgctgctgctggacaccacatccaagtcaggaccaccagacaagaagac
ctggatgatgccctagtcaacatgttggttaaagacacccagccattttcagtagtcgag
gaagagggattcgctgctttcgtccaaaagctagacccaagctacaatcttccaaacaaa
caagcgctgaagaaaatggtggggtctcggtgtgaattcatcaatgataatgttgtatct
cagatggtaatttctgactttgtcagcctgacttcggacatgtggacttctattgataag
cacagttacatttcagtgacagggcatttggtagcagaaaatgcccagttatccactttc
ctccttgggatttctaagctccctgaaaaccacaaagtgatccacattgaggaggccaaa
aaccaactggtggcgagctggggcctccacagcagggttgctgcatttgtcacagagaac
agcgacaatatggtagccacggttcagaaactaggaatcctccagttgccctcttttgca
cacgtcctgaaccttgtgattaagaggtccatggaggctactttggagctgcaggacatc
cgctcccaagcgcgggctatcgtgtctttcttcaagtcgaatcagaacgcagagatgagg
ttagccgaggtgcaagggcagctaggcaggccagagcagaagctgatccaggaagtggac
tcgagatggaacagtagcttttctatgctggaacgcgtctttgatcagagggagtctgtg
gctgctgctctcagcaccctggacacggacatcatccctctgggatctgctgactacgag
gtcatccaccagtgtctcggagtgctgggttccttcaaccaggccacagctgagctcgcc
tcagagaaacgcgtctcggcctccaaggtcattcctcttgtccggatgctgaagataacc
cttgagaagaagcacggtgccatcatacaccctacggctacacagctggcgtctaaccta
cagagggagcttcagacgagctgcagtatggtggagaccgagccaatcctggctctctct
gctctcctagacccgcgcttcaaaatgttggccttcgggaaccagggctacgctcaggag
gcggtgaagctcctcacctccgagtgcgcctcgttaatccggataaatccggacaaggat
gacactctgccgccgtccaccaccgggtcaacgacgccccccccgacatcaccccacacc
tcctgggcaatggaaaccgcttccgtctccatggcaacatctccgtctaagtcccacgat
gggggtctgtgggagatgtttgacagtaaagtgggcgagacacagagtgttcagagcagc
acggcggacgcagcggtggaggtacaacactacctcagtgacccgtacctgaaccgagtg
gagaaccccatgcactactgggagaagcactccaaggtgtacccgcacctgttccagctg
gctcggaaatacctcagtgttcccgcctcgtctgtgccatgtgagcgcatattcaccaaa
gctggagatgtgttcaataaaaagaggagttgcctcagtatgaaggctgtagagcagata
atgctgttgaataaaggtctagtatag
DBGET
integrated database retrieval system
