Oncorhynchus mykiss (rainbow trout): 110538511
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Entry
110538511 CDS
T07259
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110538511 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110538511 (ddx5)
03009 Ribosome biogenesis [BR:
omy03009
]
110538511 (ddx5)
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110538511 (ddx5)
Spliceosome [BR:
omy03041
]
Complex A
U1 snRNP components
U1 related factors
110538511 (ddx5)
Complex B
110538511 (ddx5)
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
Pre-60S particles
Helicases
110538511 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110538511
NCBI-ProteinID:
XP_021481050
Ensembl:
ENSOMYG00000031942
UniProt:
A0A8C7SSC0
LinkDB
All DBs
Position
12:78496948..78502470
Genome browser
AA seq
616 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFY
QEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNM
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGG
HSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGASG
FDKSGNGFGGGYGTNGQSNYGASQAGVFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQQ
APQPMVPYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttctgacagagatcgtggtagagatagaggatatggcagtggaccacct
cgttttgggggtggtggaagaggtggtggcggtggggggaagtttggtaatcccggtgat
cgactgcgcaagaagcactggaaccttgacgaactctctaaatttgaaaagaacttttac
caagagcacccagatgttactcggagatctccgcaagaggttgcacagtacagaagtact
aaagcggttactgtgaaggggagggactgccctaatccaattatgaagttccatgaagcc
agttttccaacctacgtgatggatgtcattaacaaagcaggctggtcagaaccaacaccg
atccaagcacagggttggccactggctttgagtggcaaggacatggttggtattgcacag
acgggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcaccag
cctttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgagctg
gctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtctgtc
tgtgtttatgggggtgcgcccaaagggccacagctccgtgacctggatagaggtgtggag
atttgcattgccacacctggcaggcttattgacttcctggaggcaggaaagaccaacatg
cgcagatgcacttacctggtactggatgaggctgaccgaatgctcgacatgggtttcgaa
ccacaaatccgaaaaattgtggaccaaatcagacctgaccgacagacgctgatgtggagt
gccacttggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtccag
atcaatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtggatgtt
tgcaatgatggcgagaaagaagacaaactcctccgccttctagaagagatcatgagtgag
aaggagaacaaaaccataatctttacagagaccaagaggagatgtgatgagatcactagg
aggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggag
agggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccacagac
gtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactacccc
aacaactctgaggactatattcaccgcatcggcagaactgcccggagccaaaagactggc
acagcctacaccttcttcacccccaacaacatgaggcaggccagtgacctcgttgctgtg
ctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggt
cattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcc
tctgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggttttgac
agtggaccaaagaaagtctttggcacaaattcacagagcggaggttatggggcaagtggc
tttgacaaaagcggcaatggttttggcggcggctacggcaccaacggccagtcaaactat
ggtgccagccaggccggggtgttcccaacacagaacttccaggccccacagtttagtgcc
aaccaaggtggtgcacagagtggcatgagccatcaacagttccccttcacacagcaacaa
gcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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