Oncorhynchus mykiss (rainbow trout): 110538643
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Entry
110538643 CDS
T07259
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110538643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110538643
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110538643
Spliceosome [BR:
omy03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110538643
Complex B
110538643
Complex C
U2 SnRNP specific factors
110538643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
110538643
NCBI-ProteinID:
XP_021481261
Ensembl:
ENSOMYG00000006634
LinkDB
All DBs
Position
12:complement(82279125..82286213)
Genome browser
AA seq
935 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGGGGGKKEELRVPQKSHTSFGGAGTAGGYGKNQQ
LPAFYKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFQSGGGSDSEDDPL
DAFMAQVEDQAAKDMKKLEEKEKEKKVEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAED
EDENIDYDSDGNPIAPTTKKIIMPLPPMDHSEIDYPPFERNFYNEHEELLSLTGTEVFEL
RHKLNLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIG
IAKTGSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSL
RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDM
GFEYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVV
EIMPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQS
ERNKVIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEK
GVAYTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGG
GGLGYRERPGLGAESSLFLQERSGGAAMGNYEGYSKPTGAMGDRMSAMKSAFQSQYKNHF
VAASGMVPKLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRGPPSLAMAPPAALGMGTKM
AGFTSAGSLSSVSDSQATAPQGNAAPPSPREGPRDRHGDDRSRHGDGHYRDRRDRSERHS
GGGERDRYGERDRHADRDRYGDKDRHGSSGRHGDSRNGEGSRRDRERDDCRGDRESGDRA
GSEGRGDRAEGKGDKEEDSFAVPDPPKRKKSRWDN
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagtaagggtggcccaagtggtaagcgagggttcgggtttggaggattttcc
cttggtggtggtggtggtggaggaggaggaggaaagaaagaagaactgcgcgtgcctcag
aaatcccacacgtccttcggaggcgcagggacagctggaggttatggcaagaaccagcaa
ctccctgcattctacaagataggaacaaaaagagcaaattttgatgaagagaatgcgtat
tttgaagatgatgaagaggagtcaagcagcacagatttgccatatatcccagctgagaac
tcccccacacggcaacaattccagtctggagggggctcagacagtgaggatgatcctctg
gatgctttcatggcccaagtggaggaccaagcagctaaagacatgaagaaactggaggaa
aaagagaaggaaaagaaggttgaaaagggtatacgtgatgacattgaagaggaagatgaa
caagaagcctacttccgctacatggcagagaatcccacagctgggctgaccgcagaggac
gaggatgagaacatagactacgacagtgatgggaatcccattgcccccaccactaagaag
atcatcatgcccctgcccccgatggaccactctgagattgactacccaccttttgagagg
aacttctacaacgagcatgaggagcttctcagcctgacaggcaccgaggtgtttgagctg
agacacaaactcaacctgcgggtgtctggtgccgcccctcctaaactctccaccagcttc
gcccactttgggtttgacgagcagctgatgcatataatccgcaagtcggagtacactcag
ccaacacctattcagtgccagggagttcccattgccctgagtggacgtgacatgattggc
attgcgaaaactggtagtggcaagactgcagccttcatctggcccatgctagttcacatc
atggaccagaaggaactggagactggagaggggcctattgcagtcatcgtgtgccccacc
agggagctctgtcagcagatccacgcggagtgtaagcgttttgggaaagcctactccctg
cgctcggtggcggtatatggaggaggcagcatgtgggagcaggccaaggctcttcaggag
ggggcagagatagttgtgtgcaccccgggtcgtctgattgaccatgtgaaaaagaaggcc
acctctctgcagagagtgacatacctggtgtttgatgaggcagatagaatgtttgatatg
ggctttgagtatcaagtgagatccattgccagccatgtccgacctgatcgacagactctt
ctgttcagcgccaccttccgtaagaagattgagaggctggctagagatatcctggtggac
cccatccgcgtggtgcagggagacatcggggaggccaatgaggatgtgacccaggtagtg
gagatcatgcccagtggggtggagaagtggggctggctgacccgccgcctggtggagttt
acctcctctggctctgtacttatcttcgtcaccaaaaaggccaactgtgaagagctggcc
accaacctgacccaggagggccacagcctgggcctgctgcacggagacatggaccagagt
gagaggaacaaggtcatcgctgacttcaagaagaagagtcttcccgtgctggtggccacc
gacgtggcagcccgtggtctggatatcccttcaatacgcacagtagtgaactatgacgtg
gctcgggacatcgacacacacacacaccgaattggccgaactggtcgtgctggagaaaag
ggtgttgcctacacccttctcaccagtaaagacacatcatttgcaggagaccttgtgcgt
aacctggagggagccaatcaaagtgtctctaaggagctgatggacttggcaatgcagaat
ccctggttcaggaaatcacgcttcaagggcggcaaagggaagaagctaaacattggagga
ggtggtctgggctacagagagaggccaggattgggagctgaaagttctttgtttctccag
gagcgtagtggtggtgctgccatgggtaactatgagggctacagcaagcctaccggagcc
atgggagaccgcatgtcagcaatgaagtcagccttccagtctcagtataagaaccacttt
gtggcggcgtccggcatggttcctaaactcaccactaagtccagtagctcttcaggctgg
accagcgctggaagtctgagctccgtccccaccggggcccctgagggcccagaccggccc
cgtgggcccccctccttagccatggcccctccagcagccctcggcatgggcaccaagatg
gcaggcttcaccagcgctggctccctgagctctgtgtcagacagccaggccactgctcct
caggggaatgccgccccaccctcacccagggaagggccccgtgacagacatggtgatgac
aggagtcgccatggagatggccactatcgtgacaggagagacaggagcgagcggcacagt
ggcgggggagagcgggaccgctacggggagcgggaccgccacgcagaccgcgacagatac
ggggacaaggatcgccatggcagcagtgggcgccatggcgatagtcgtaatggagaggga
agtagaagggacagagagcgagacgattgtagaggtgacagggagagtggagacagggca
gggagtgaaggaaggggggacagagctgaggggaaaggagacaaagaggaagacagcttt
gcagtcccagatccaccaaaacgcaaaaagagtaggtgggacaactaa
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