Oncorhynchus mykiss (rainbow trout): 110538903
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Entry
110538903 CDS
T07259
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04270
Vascular smooth muscle contraction
omy04625
C-type lectin receptor signaling pathway
omy04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
110538903
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
110538903
09153 Circulatory system
04270 Vascular smooth muscle contraction
110538903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110538903
Membrane trafficking [BR:
omy04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
110538903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
110538903
NCBI-ProteinID:
XP_036793548
LinkDB
All DBs
Position
12:46093585..46213822
Genome browser
AA seq
1484 aa
AA seq
DB search
MSETQSTLTDRTLSILSKDHPPDKKPKSDKNTVPPLQEFDPTGLVQRCVIIQKDENGFGL
TVSGDNPVFVQLVKEDGSAMRAGVQTGDRIIKVNGSLVTHSNHVEVVKLIKSGSYVALTV
LGRPPRLAQVPLSEVEGGDPGVLSSSLSSPHSPGTMGGTGEHCSTSTSSQDHIISPLSLW
EENNAVHSQKVDILQNMLSKQQQDLQAMKEEYSRNPTAKLLKDIQEAKKHSPMLRGQLRK
ATGTPQDGSLSPWDGEGGADGEQTPSSQVESGSNGTWTNITVSLSPLPESPCQRETLCHN
PKTTPRDSLNSCPSPDAEDTPDLNCNFQCSVGSPLTCLNPQIIGAEDDYFDTEQEQINGQ
CCCFQSIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYADLYKQTNSKETRRIFMDFYTF
FMDRAANLKVAVPESIASELDRRRPELIPEELHRQYTQLLQDTLLPDIQGNLEDFRQKRS
MGLTLAEGELSKLDTERVRDRVALDRERSCAEHIISKIEDVLLTSQPTEEEKCTTMQYVI
LTYMKHLGVKVKEPRSLEPKRVRINFLPKIKKSIKTEKEGEDKVKKPRFPSILGPPRRPS
RVDSTSIGKAIEMNKQRGPQKQISQPILSIPDLPESLARGSQSSDPGSDVATHPSAFIAS
PPHSAPASQGSDPMGRDSDSGLTPSSALPRLSSDWLHSGDTQNRMAHPTSTHFDFSPYTL
DQLQEEERESDGVPEGGTPKPARRMQGLGCPDVPNEDDLGNEIECKQDSPNWQTLVSREV
LAGLTPQEIKRQEVINELFYTERAHLRMLKVLDNVFYQKLTRDSILPPGDIKHIFTNLEE
IVQLHVSITEQVTVIRKKNETSVIDLIGDDLLAWFSDGEEEKIKRAVGTFCSNQPFALEL
IKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLESIAKYTEDAAER
DKVKRAGECCRKILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTK
RKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLVLKCHSKNLAGTADTKHIFS
PIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQRTWQCLITQRADTMKTK
PHNIIPLPQTDAERDAVEVISTGIPKLSKDPDHLSTGSIQFAEKYVTSSPGLQPTPTSIN
PLDSIKSDDKEEESPLLLDRREEEEEEVEEVDEEEVEAFLVGELADRLPLLQERSCQGIA
IDDQEPHDAFVMPLSRAEEALRTLAALRQVLLNHMTSREEGIDKNNENRKEKEQRKGLAH
GARLLRTTSLRGPEDSNSSTSGPRSAAASSPGSSENGTAGREEGAPGSSELPSGDTGFFE
TSEDYGSYIVLGGSGESSTDDDGQASGKGGARAQWGSDIDLKKLLSSSSQTGDAGPNLSR
QVITHIRLLQANLQHLKEVETKYNELRQRLSETATDTEENKDES
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacacagtcaacactcactgacaggacccttagcattctcagcaaggaccac
cccccagacaagaaacccaagagtgacaaaaacacagtcccacctctgcaggagtttgac
cctactgggcttgtccagcgttgtgtgatcattcagaaagatgagaacggctttgggctg
acggtgagcggagacaaccctgtatttgtgcagctggtcaaagaggatggctctgccatg
cgagcgggagtccagacgggtgataggatcatcaaggttaacgggagcttagtaacacat
tcaaaccatgtagaagtcgtaaagttaatcaaatcgggctcctatgtggccctcacagtg
ctggggaggcccccgagactggcccaagtccccctgtcagaagtcgagggtggagaccca
ggggtcctgtcgtcgtccctctcctcaccccactctccgggaacaatggggggaacaggg
gagcactgctccacctccaccagttcccaggaccacatcatctccccgctgtccctctgg
gaggagaataacgctgtacacagccagaaggtggacatcttacagaatatgctgtccaag
cagcagcaggacttacaggctatgaaggaggagtacagcaggaaccccacagcgaaacta
ctgaaggacatccaggaggccaagaaacacagtcctatgctacgtggccaactcagaaag
gccacaggcacacctcaggatggctccctctccccctgggatggtgaggggggggccgat
ggagagcagaccccctcctcgcaggtagagagtggcagcaatggaacctggaccaatatc
actgtgtctctcagtcccctccctgagagtccgtgccaaagagagaccctctgccataac
ccaaagaccaccccccgagacagcctcaactcctgcccctcgcctgacgccgaggacacg
ccggacttgaactgtaacttccagtgtagtgtgggcagccccttgacctgtctcaacccc
cagatcatcggagcagaggatgactactttgacaccgagcaggaacagatcaatggtcag
tgttgttgtttccagagtatagagttgctcaagtctcggcccgctcacctggccgccttc
ctccatcatgtggtctctcagtttgaccctgcacctctgctgtgctacctttacgccgac
ctgtacaagcagaccaactccaaagagaccagacggatcttcatggatttctatactttc
tttatggaccgagcagcgaatctgaaagtagctgtgcctgagtctattgcctctgaacta
gatcggcggagacctgagctgatcccagaggagctacacagacagtacacacagctgcta
caggacacactgctaccagacatccaggggaacctagaggacttcaggcaaaagcgcagc
atgggtctgaccttggcagagggggagctgtctaaactggacacagagagggtgagagac
cgcgtggcgctggatagagaacgctcctgtgccgaacacatcatctccaagatagaggac
gtcttgctgacgtcacagcccacagaagaggagaagtgcactactatgcagtatgttatc
ctcacatatatgaaacacctgggagttaaagtgaaggaacctcgtagcctagagcccaaa
cgagtccgcatcaacttcctacccaagatcaagaagagcatcaaaactgagaaagagggg
gaggataaggtgaagaagcctcgttttcccagcatcctcggccctcctcgtcggcccagc
cgtgtggactccacttcaatcggcaaggccatagagatgaacaagcagcggggccctcag
aagcagatctcccagcccatcttaagcatccccgatctcccagaatccttggcccgcggc
agccaatcaagcgatccaggctcggatgtggcaacccacccctcggccttcatcgcatca
cccccacacagtgccccagccagccagggctccgaccccatgggacgcgattctgactcg
ggtctcactccctcctccgccctgcccagactgagctctgactggctccactcgggcgac
acccagaacaggatggcccacccaaccagcacccactttgacttcagcccctacaccctg
gaccaattgcaggaggaggagcgtgagagtgacggagttccagagggaggcacacccaaa
ccagcccggaggatgcagggtttaggctgtccagatgtgccgaatgaggacgacctaggg
aatgagatcgagtgcaagcaggactctcccaactggcagacgctagtcagccgagaggtc
ctggcgggcctgacaccacaggagatcaagagacaggaagtcatcaacgagctgttctac
acagagcgagcccacttgaggatgttgaaggttctggataacgtgttctaccagaaacta
acccgagacagcatcctgcctcctggagacattaaacacatctttactaacctagaggag
attgtccagctacatgtgtcgataacagaacaggtgacagtcattcggaagaagaacgag
acgtcagtgatagacctgataggagacgatctactagcttggttcagtgatggcgaggag
gagaagatcaagcgggcggtgggcaccttctgcagtaaccagcccttcgccctggaactc
attaagacccggcagaagaaggaccagcgcttcacctcctttatgcaggaggctgagagc
aaccgcctgtgtcgcagactccagctgaaggatataattccagtggagatgcagaggctg
accaagtatccactgctgctggagagcatagccaagtacacagaggatgcagcggagagg
gacaaggtgaagagggccggggagtgctgcaggaagatcctcaactatgtcaaccagaca
gtgaaagaggcagagaacaaacagaggttagaggactaccaaagacgcctggacctgtcc
tcactcaaacagagtgagaacccaatgatctcagagttcaagagcctggacctgaccaag
aggaagatggtgcatgagggacctctctcctggaaggtcaacaaagacaagacaatcgag
ctgtacacgctgctcctggaggacatcctggtgctgctgcagaagcaggacgagcggttg
gtcctcaagtgccacagcaagaacctggcgggcaccgccgacaccaagcacatctttagc
cccatcatcaagctcaacactgtgctggtgcgctcggtggccaccgacaacaagtccttc
ttcgtgctgtctatgtccgacaacggagcccagatctacgagctaatggcccagaccgtg
tctgagcaaagaacgtggcagtgtctgataacgcagagggcagacaccatgaagacgaaa
ccgcacaacatcatacctttacctcagaccgatgctgagcgagacgcagtggaggtgatc
agcacagggatacccaaactgagcaaagacccagaccacctttccacgggaagtatccag
ttcgcagaaaaatatgtcacttcctcgcctggtctgcaacccacgcccacatcgatcaac
ccattagacagcatcaaatcagacgacaaggaagaagagtcgccgctactgctagacaga
agagaagaggaggaggaggaagtggaggaggtagatgaggaggaagttgaagcgtttctg
gttggagagctggcagacagactgcccttactccaggagaggtcatgccaaggcattgcc
atcgatgaccaggagccccatgatgccttcgtcatgcccctctccagagccgaggaggcc
ctaagaaccttggcagccctgaggcaggtccttctcaaccacatgacaagcagagaggag
ggcatcgacaagaacaatgagaataggaaggagaaggagcagagaaagggcttggctcat
ggcgcccgcctgctgaggacgacgtcactgaggggcccagaggacagcaacagcagtaca
tcgggccctaggagcgcagcagcatcctctcctggctcctcggagaacggcacggcgggg
agggaggagggtgccccaggatcctcagaactcccgtctggggacacaggcttcttcgag
acatctgaggactatggcagttacattgtcctggggggctcgggggagagcagcacagac
gacgatggtcaggcgagtggcaagggtggagccagggcccagtggggctcggacatcgac
ctgaagaagctgctctcctcatcctcacagacaggggatgctggccccaacctcagccgt
caggtcataacccacatccgcctgctgcaggccaacctgcaacacttgaaggaagtggaa
accaagtataatgaactgcgccaaaggctgagtgaaaccgctactgacacagaggagaac
aaagatgagagttag
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integrated database retrieval system
