Oncorhynchus mykiss (rainbow trout): 110538942
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Entry
110538942 CDS
T07259
Name
(RefSeq) interferon epsilon
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04060
Cytokine-cytokine receptor interaction
omy04217
Necroptosis
omy04620
Toll-like receptor signaling pathway
omy04621
NOD-like receptor signaling pathway
omy04622
RIG-I-like receptor signaling pathway
omy04623
Cytosolic DNA-sensing pathway
omy05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
110538942
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
110538942
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
110538942
04621 NOD-like receptor signaling pathway
110538942
04622 RIG-I-like receptor signaling pathway
110538942
04623 Cytosolic DNA-sensing pathway
110538942
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
110538942
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Gene cluster
GFIT
Motif
Pfam:
Interferon
Motif
Other DBs
NCBI-GeneID:
110538942
NCBI-ProteinID:
XP_021481585
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Position
12:66011207..66012308
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AA seq
177 aa
AA seq
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MATLNVSFVVHLLCIIVFYPAVYAKCSAPKVQKYYLSQTHQTLNDLAEERLPRGCIPEAE
RLRVQRPALPIEEGEKVWTLRLAFQLASELFQQNLTLVKWNSVKLRDLQDLLARQNMTYS
ECVRDMSVHLNLPIKNYFKELEDFLSHERFSACSWELVRAEMGSIISQAIRNAKKHV
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcttaacgtgtcctttgtggtacatcttctgtgtataattgttttttacccg
gctgtgtatgctaaatgcagtgctccaaaagtgcaaaaatattatctttctcaaactcac
cagaccctcaatgatcttgccgaggagaggttaccaagaggctgtatcccagaagctgaa
aggttaagggtccaacgtccagcgcttccaatagaggagggggaaaaggtttggacactg
agacttgcgtttcaactagccagcgagctcttccaacaaaacctaactcttgtgaaatgg
aattccgtcaaactcagggaccttcaagaccttcttgctcgacaaaatatgacctattcg
gaatgtgtgagagacatgagtgtgcatctaaaccttccaattaagaactacttcaaagag
ctggaagactttctttcacatgagcgtttcagcgcgtgctcatgggagctcgtgagagct
gaaatggggagcatcatttcacaagcaatcagaaatgccaagaaacacgtgtga
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