Oncorhynchus mykiss (rainbow trout): 118936269
Help
Entry
118936269 CDS
T07259
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010
MAPK signaling pathway
omy04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118936269
04020 Calcium signaling pathway
118936269
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omy04040
]
118936269
Ion channels [BR:
omy04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118936269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
118936269
NCBI-ProteinID:
XP_036791567
LinkDB
All DBs
Position
11:complement(50211751..50365331)
Genome browser
AA seq
1898 aa
AA seq
DB search
MSMKMYGLGPMSYFHSSFNCFDFGVIIGSIFEVIWAVVKPGASFGISVLRALRLLRIFKV
TKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGLFNFDEETPTTNFDT
FPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSIYFIVLTLFGNYTLLNVFLAIA
VDNLANAQELTKDEEEQEVAITKKMALQKAKEVKEVSPMSAANISITALHSILYTGQHGA
ERAMPASFVKQSQGALSSSSSVCSVNSLKEQQKSLKMMSVWEQRTTQLRRHNLRASSEAL
YSELDPEERLRMSSALHIRPDMKTHLDRPLVVEPHDGPGPMGQHKPRTPEETDTPEDPAG
PQPRRHHRHRDRERPIDEANENGDPGKEGRHHVHHSRSKDPEGTRGKEGKSERSRSREGG
KRHHHQTLVDEGGGGGGTGEREHRHHHSHRQAREGNGTVNSGGKGERRSRHKDGRSGERC
SRGENGANGERRRHKTHGSRGQSTLEGEDHSEREKGRGHRDRYVESEGDSLAISPQQDPG
DQRWGTEGPEDSDNQRNVRRTGQTAVNIPPVTITPPPGETTLIPMNSIDCETMPMNEEKK
TLEERTQSGPRPILPYSSMFVFGQANVVRRLCHYIVSLRYFEMCILVVISMSSIALAAED
PVQANAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGSYFRDLWNILDFIVVSGAL
VAFAFSSFMGPPQGVPRGSKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLK
NVFNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKSLEKDCRGNFLDYDKDEVAAQPRV
WKKYEFHYDNVLWAFLTLFTVSTGEGWPDVLKHSVDATFEDQGPSPGYRIEISIFYVVYF
VVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNERACIDFAINAKQMTRYMPENVQSF
QYRMWKFVVSPPFEYSIMIMIALNTVVLMMKFHGAPDFYEAMLKHFNIVFTALFSLECIL
KIIAFGPLNYLKDAWNVFDFVTVLGSITDIVVTEINTTDRLLNLSFLRLFRAARLIKLLR
QGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEDTAITHHNNFRT
FLQALMLLFRSATGEAWHEIMLSCLSHRACDERSGNLGKECGSDFAYFYFVSFIFLCSFL
MLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIRYNDMYNLLRIISP
PLGLGKNCPNRVAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLSSGMVAQRLSDA
ELKKELSTVWPSLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQNRAKRLKEQQQQQ
QQQNAAGSQGKVGALFKPILPLTYKQEKEKEKAINNMEPPCELLPQPQPQALPRPSSTLL
NNMEPPCELLPQPQALPRPSSTLLNNGGTLPGHDGTMKGSSSWVSEKSREVHRPRNKTPV
QRGQSEDVPNTTLPQESVEMRKMDTSDSTVPGPGSGLESQGRAVSMPRLNAELQRSQSRH
SPGTLLAPVPDCSPMKRSASTHAPQRPQEANLRDYTLETPSIQERPHHHHHHRCHHRRER
DKKQRSLDRTPSTAGTPGDPAAEPSSRDRVQDRGRSHERKNHSTAGEKQRYYSCDRYGSR
EHCHTTKSATTSCATSPSEVQDPSINKQGSGSVKCSPVMMTSGASTPSRGRRQLPQTPLT
PRPGVAYKTANSSPVHFVSAQCSSGLPTLSPGRLSRGLSEHNALLHSGSSHIPSPVTRIS
SEPFLGYSHREAQGQGSLYCSLRDELLSPYAARARSPRTAQPQMGPGPLHLPPPPQQSHA
VPNGYHFTFGGIGNASPESGSGARAPRYYHEADEDEWC
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaaaatgtatggactaggacccatgagctacttccattcgtctttcaactgt
tttgacttcggagtgattataggcagtatttttgaggtgatctgggcagttgtgaaacct
ggggcctccttcggcatcagcgtcctgagagctctccgtctgctcaggattttcaaagtc
actaagtactggaactctctgaggaacctggtggtctctctactcaactccatgaagtcc
atcatcagcctgctgttcctcctcttcctcttcattgtggtattcgccctactgggcatg
cagctctttgggggactgtttaattttgacgaggagacgccaacaacaaactttgacacc
tttccagcagccattctcacagttttccagattctgacaggagaggactggaatgcggtg
atgtatcatgggatagagtcccaggggggcgtgcgccggggaatgttctcctccatctac
ttcattgttctcaccctgtttggaaactacactctcctcaatgtcttcttggccatcgct
gttgacaaccttgcaaacgcacaggagctcactaaggatgaggaagagcaggaggtggcc
atcaccaagaagatggccctccaaaaggccaaggaggtcaaggaggtcagccccatgtcg
gccgcaaacatctccatcacagcgctacacagcatcctgtacacaggccaacatggagcg
gagagggcaatgccagcaagttttgtaaagcaaagtcaaggtgcactctctagcagctcg
tccgtctgcagcgttaattcacttaaggagcagcagaagtctctgaagatgatgtcagtg
tgggagcagcgaaccactcagctgaggagacacaacctgcgggccagcagtgaggccctg
tacagcgagctggaccctgaggagaggcttcgtatgtcctccgccctgcacatccgccct
gacatgaagacccacctggaccggcccctggtggtggaaccccatgacggccccggccct
atgggccaacacaagccccggacccctgaggagacggatacccctgaggacccggccggc
ccccagccacgcaggcaccatcgccaccgggacagggagagacccatcgacgaggccaat
gaaaatggcgatccaggcaaagagggtaggcaccatgtccaccacagtcgtagcaaggac
ccagaaggcacccggggcaaggaggggaagagtgagcggtcgcgcagccgagaggggggc
aagaggcaccaccaccagaccttagtggatgagggaggaggaggaggggggacgggggag
agagagcaccgccaccaccactcccacagacaggccagagagggcaacggcactgtcaac
agcggaggcaagggcgagcgcaggtcacgccacaaagatggccgctcgggagagaggtgc
tccaggggagagaacggagccaatggggagaggaggagacacaagacccacggctcaagg
ggccagtccacactggagggagaggaccacagtgagagagagaaggggaggggccacagg
gacagatatgtggagtctgagggcgactccctggccatcagcccccagcaggaccctgga
gatcagaggtggggcacagagggacctgaagactcagacaaccagaggaacgtcagacgg
actggacagacggccgtcaacatcccccctgtcaccatcacccccccacccggggagact
acccttatccccatgaacagtatagactgtgaaacaatgcctatgaacgaggagaagaag
accctggaggagcggactcagagtggacccagacccatcctgccttacagctccatgttt
gtgtttggccaggccaacgtggtgcggcgtctgtgtcattatattgtcagcctgcggtac
tttgagatgtgtatcctggtagtgatatccatgagtagcattgcattggctgcagaggac
cctgtccaggccaacgctccgcgcaacaatgtgctcaagtatctggactacgtcttcacg
ggagttttcacatttgagatggtgattaagatggttgacctgggcctcctgctccatcct
ggttcttacttcagagatctctggaacattctggacttcattgtggtcagtggcgcactg
gtggcatttgcattttcgagcttcatgggaccgccacaaggtgtgcccagagggtccaaa
ggaaaggacatcagcaccatcaagtccctcagagttctgcgagtcttacggcccctcaag
accatcaaacgcctacccaagctgaaggctgtgtttgactgtgtggtaaactccctgaag
aacgtgttcaacatcctcatagtctacatgctcttcatgttcatcttcgctgtcatcgcc
gtgcagctgttcaagggcaagttcttctactgcaccgatgagtccaagagcctggagaaa
gactgcagaggtaatttcctggactatgataaagatgaggtggccgcccagcctcgggtg
tggaagaagtatgagttccactatgacaacgtgctttgggccttcctcactctcttcact
gtgtccaccggagagggctggcctgatgttctgaagcactctgtggatgctacctttgag
gaccagggtcccagtccaggctaccgtatagagatctccatcttctacgtggtctacttt
gtggtcttccccttcttcttcgtcaatatctttgtggccttgatcatcattaccttccag
gagcagggagacaaggccatgtcagagtgcagcctggagaaaaacgagagagcctgcatt
gactttgccatcaacgccaagcaaatgacgcgttacatgccagagaacgtgcagtccttc
cagtaccggatgtggaagtttgtggtgtcacctccgtttgagtactccattatgatcatg
atcgccctgaacaccgtggtgctcatgatgaagttccatggagctccagacttctacgag
gccatgttgaagcacttcaacatcgtcttcactgccctcttctctctggaatgcattctg
aagatcattgccttcggtccgctgaattacctgaaggatgcctggaacgtgtttgacttt
gtgacagtgctgggaagtataactgacattgtggtcacagaaatcaatacaacggaccgg
ctgttgaatctgagttttctgaggctgttcagagcagctcgtctcatcaagctgctgagg
cagggatacaccatccgtatcctgctgtggaccttcgtccagtccttcaaggccctgccc
tatgtttgccttctgatagcgatgctgttcttcatctatgccatcattggtatgcaggtg
tttggaaacattgagctcaacgaggacacagccatcactcaccacaacaacttccgcact
tttcttcaggccctcatgctgctgttcaggagtgccacaggggaggcgtggcatgagatc
atgctgtcgtgtttgagtcacagagcctgtgatgagaggtcaggcaacctggggaaggag
tgtggcagtgacttcgcctacttctactttgtctccttcatcttcctctgctctttcctg
atgctcaatctgtttgtggctgtcatcatggataactttgagtacctgactcgagactcg
tctatactggggcctcatcatctggatgagttcatccgtgtttgggctgagtacgaccct
gctgcctgcggacggattcgctataacgatatgtacaacttgttacgaattatctcaccc
cctcttggcttagggaagaactgccctaatagggtagcgtacaagcggctagtcaagatg
aacatgcccatcgctgatgacaacacagtccactttacctccactctcatggccctgatc
cgcacggccctggagatcaaactgtcctcagggatggttgcccagcgtctttctgatgct
gaactgaagaaagagctctctacagtttggccaagcctttcacagaagactatggatctg
ttggttacaccacacaaacccaatgagcttactgttgggaaggtgtatgcagccctgatg
atctttgactactacaagcagaaccgagccaagaggctcaaggagcagcaacagcagcaa
cagcaacagaatgctgccggctcccagggtaaggtgggggctctgtttaaaccaatactg
cccctgacttacaagcaggagaaagagaaggagaaggccatcaacaacatggagcctccc
tgtgaacttcttcctcagccccagcctcaggccctacctagacccagctccaccctgcta
aacaacatggagcctccctgtgaactacttcctcagcctcaggccctacctagacccagc
tccaccctgctcaacaacggaggcacactgccaggccatgatggcaccatgaaaggatcg
tcctcctgggtgtcagagaagtctagagaggtccacagacccaggaataagacacctgtc
caaaggggccagtctgaagatgtcccaaacacaacccttccccaggagtcagtggagatg
aggaagatggacaccagtgacagcacagtgcctggtcctgggtctggactggagagccag
gggagggctgtatccatgccccgcctcaacgcagagctacagaggagccagtcacgccac
tccccggggaccctgctggcccctgttcctgactgcagcccgatgaagcgctctgcgtcc
acccatgccccacagcgcccccaagaggcgaacctgcgtgactacaccctggagacgccc
agcatccaggaaaggcctcaccaccaccaccaccaccgctgccaccaccgtagagagagg
gacaagaagcagcggtcactcgacaggacgccaagcaccgctggtacaccaggagacccg
gctgcagagccctcgtctagagacagggtgcaggaccgcggccgctcccatgagaggaag
aaccactcgacggcgggggagaagcagcggtactactcctgcgatcgctacggcagcagg
gaacactgccacaccaccaagtctgccaccaccagctgtgccacctcccccagcgaggtg
caagaccccagcatcaacaagcagggtagtggttcggttaaatgcagcccagtgatgatg
acctcaggggctagcacacccagccgtggacgcaggcagctaccccagacccccctgacc
ccccgccccggggtggcctacaagactgccaactcctcccctgtgcactttgtgtctgcc
cagtgtagcagtggcctgcccaccctgagtcctggccggctgagccgcgggctgtctgag
cacaacgccctgctgcacagtggctcctcccacatcccctcccctgtcacccgcatcagc
tctgagccattcctgggttacagtcacagggaagcccagggccagggcagtctgtactgc
agcctccgggacgagctgctgagcccctatgctgccagagcacgctcccctcggaccgca
cagcctcagatggggccggggcccctccacctgcctccgccaccccagcagagccatgcg
gtgcccaacggataccacttcacctttggtggtattggcaacgccagcccggagtctggc
tctggcgccagggcacccaggtactaccacgaggcagatgaggatgaatggtgctag
DBGET
integrated database retrieval system
